C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: lysine (K)-specific demethylase 4C
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000030102 Kdm4c-001 ENSMUSG00000028397 10090 + 4:74251936-74405860 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENSMUST00000030102
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUST00000030102 2.356±0.77 1.152±0.35 4.621±0.03 5.743±2.23 1.817±0.37 1.385±0.46 1.214±0.27 2.201±0.13 1.400±0.71 2.579±0.25 1.777±0.39 2.784±2.55 5.530±1.08 0.864±0.29

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0001D7 CIL_0001D7_0002 CGP 4:74242497-75278305

Gene Ontology

GO IDEvidence TypeGO Description
GO:0005634 IEA nucleus
GO:0006351 IEA transcription, DNA-templated
GO:0006355 IEA regulation of transcription, DNA-templated
GO:0008270 IEA zinc ion binding
GO:0019899 IPI enzyme binding
GO:0032454 ISS histone demethylase activity (H3-K9 specific)
GO:0033169 ISS histone H3-K9 demethylation
GO:0050681 IPI androgen receptor binding
GO:0051213 IEA dioxygenase activity
GO:0055114 IEA oxidation-reduction process

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSDART00000065583 KDM4A (1 of 2)-201 protein_coding Danio_rerio 0 322
ENSDART00000151359 KDM4A (1 of 2)-001 protein_coding Danio_rerio 0 322
ENST00000381306 KDM4C-002 protein_coding Homo_sapiens 0 1578
ENST00000381309 KDM4C-001 protein_coding Homo_sapiens 0 1821
ENST00000401787 KDM4C-010 protein_coding Homo_sapiens 0 675
ENST00000420847 KDM4C-006 protein_coding Homo_sapiens 0 778
ENST00000428870 KDM4C-013 protein_coding Homo_sapiens 0 1821
ENST00000438023 KDM4C-011 nonsense_mediated_decay Homo_sapiens 0 1491
ENST00000466673 KDM4C-008 processed_transcript Homo_sapiens 0 457
ENST00000480996 KDM4C-004 processed_transcript Homo_sapiens 0 399
ENST00000489243 KDM4C-003 processed_transcript Homo_sapiens 0 1245
ENST00000490806 KDM4C-009 processed_transcript Homo_sapiens 0 462
ENST00000535193 KDM4C-201 protein_coding Homo_sapiens 0 1482
ENST00000536108 KDM4C-001 protein_coding Homo_sapiens 0 1482
ENST00000543771 KDM4C-014 protein_coding Homo_sapiens 0 1482

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