C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Region Summary
CIL_0001D7_0001 (Click to Hide/Show)
Source ID Type Tax ID Position
ENSG00000107077-ENSG00000137038 CGP 9606 9:6757641-7888380
GeneTranscriptPositionBiotype
ENSG00000107077 (KDM4C)
lysine (K)-specific demethylase 4C 		ENST00000381306 (KDM4C-002) 6757656-7170932 protein_coding
ENST00000381309 (KDM4C-001) 6757656-7175648 protein_coding
ENST00000401787 (KDM4C-010) 6757654-6815149 protein_coding
ENST00000420847 (KDM4C-006) 7013788-7169829 protein_coding
ENST00000428870 (KDM4C-013) 6925501-7175347 protein_coding
ENST00000438023 (KDM4C-011) 6757641-7014337 nonsense_mediated_decay
ENST00000466673 (KDM4C-008) 7127907-7169884 processed_transcript
ENST00000480996 (KDM4C-004) 6805617-6819079 processed_transcript
ENST00000489243 (KDM4C-003) 6758103-6893632 processed_transcript
ENST00000490806 (KDM4C-009) 7104268-7170212 processed_transcript
ENST00000494570 (KDM4C-005) 6984281-6986866 processed_transcript
ENST00000495890 (KDM4C-007) 7049192-7104017 processed_transcript
ENST00000496464 (KDM4C-012) 6893123-6948214 processed_transcript
ENST00000543771 (KDM4C-014) 6758143-7077263 protein_coding
ENSG00000137038 (TMEM261)
transmembrane protein 261 		ENST00000358227 (TMEM261-003) 7796490-7800067 protein_coding
ENST00000469050 (TMEM261-002) 7798344-7888380 processed_transcript
ENST00000484082 (TMEM261-001) 7798199-7800148 processed_transcript
ENSG00000178654 (PPIAP33)
peptidylprolyl isomerase A (cyclophilin A) pseudogene 33 		ENST00000441944 (PPIAP33-001) 7597823-7598377 processed_pseudogene
ENSG00000224972 (RP11-403H13.1)
 ENST00000445708 (RP11-403H13.1-001) 6902670-6978859 sense_intronic
ENSG00000230207 (RPL4P5)
ribosomal protein L4 pseudogene 5 		ENST00000413888 (RPL4P5-001) 7477045-7478320 processed_pseudogene
ENSG00000230581 (ACTG1P14)
actin, gamma 1 pseudogene 14 		ENST00000446382 (ACTG1P14-001) 6834456-6835577 processed_pseudogene
ENSG00000273056 (RP11-77E14.2)
 ENST00000609091 (RP11-77E14.2-001) 7786105-7786688 lincRNA
CIL_0001D7_0002 (Click to Hide/Show)
Source ID Type Tax ID Position
ENSMUSG00000028397-ENSMUSG00000028398 CGP 10090 4:74242497-75278305
GeneTranscriptPositionBiotype
ENSMUSG00000028397 (Kdm4c)
lysine (K)-specific demethylase 4C 		ENSMUST00000030102 (Kdm4c-001) 74251936-74405860 protein_coding
ENSMUST00000077851 (Kdm4c-006) 74242497-74405860 protein_coding
ENSMUST00000148753 (Kdm4c-003) 74262810-74269682 processed_transcript
ENSMUST00000149295 (Kdm4c-005) 74262809-74333742 protein_coding
ENSMUST00000150439 (Kdm4c-002) 74262810-74273659 processed_transcript
ENSMUST00000156065 (Kdm4c-004) 74262809-74331560 processed_transcript
ENSMUSG00000028398 (Tmem261)
transmembrane protein 261 		ENSMUST00000030103 (Tmem261-001) 75277354-75278305 protein_coding
ENSMUSG00000081067 (Gm12912)
predicted gene 12912 		ENSMUST00000121596 (Gm12912-001) 75147609-75148989 processed_pseudogene
ENSMUSG00000083659 (Gm11258)
predicted gene 11258 		ENSMUST00000121086 (Gm11258-001) 74688107-74689324 processed_pseudogene
ENSMUSG00000085482 (A230083N12Rik)
RIKEN cDNA A230083N12 gene 		ENSMUST00000126646 (A230083N12Rik-001) 74250324-74251714 antisense

Expression Patterns

Heat Map
Heat Map (Expressed Only)
Numeric Values
Region; Gene Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisCIL_0001D7_0001ENSG00000107077ENST00000381306ENST00000381309ENST00000401787ENST00000420847ENST00000428870ENST00000438023ENST00000466673ENST00000480996ENST00000489243ENST00000490806ENST00000494570ENST00000495890ENST00000496464ENST00000543771ENSG00000137038ENST00000358227ENST00000469050ENST00000484082ENSG00000178654ENST00000441944ENSG00000224972ENST00000445708ENSG00000230207ENST00000413888ENSG00000230581ENST00000446382ENSG00000273056ENST00000609091CIL_0001D7_0002ENSMUSG00000028397ENSMUST00000030102ENSMUST00000077851ENSMUST00000148753ENSMUST00000149295ENSMUST00000150439ENSMUST00000156065ENSMUSG00000028398ENSMUST00000030103ENSMUSG00000081067ENSMUST00000121596ENSMUSG00000083659ENSMUST00000121086ENSMUSG00000085482ENSMUST00000126646
Region; Gene Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisCIL_0001D7_0001ENSG00000107077ENST00000381306ENST00000381309ENST00000428870ENST00000438023ENST00000480996ENST00000489243ENST00000543771ENSG00000137038ENST00000358227ENST00000469050ENST00000484082ENSG00000178654ENST00000441944ENSG00000224972ENST00000445708ENSG00000230207ENST00000413888ENSG00000230581ENST00000446382ENSG00000273056ENST00000609091CIL_0001D7_0002ENSMUSG00000028397ENSMUST00000030102ENSMUST00000077851ENSMUST00000156065ENSMUSG00000028398ENSMUST00000030103ENSMUSG00000081067ENSMUST00000121596ENSMUSG00000083659ENSMUST00000121086ENSMUSG00000085482ENSMUST00000126646
Gene Transcript Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSG00000107077 ENST00000381306 N/A N/A N/A N/A 1.631±0.00 N/A N/A 0.776±0.00 0.834±0.00 1.527±0.00 N/A N/A N/A N/A
ENST00000381309 1.339±0.00 2.699±0.00 N/A 1.327±0.12 2.559±0.95 2.425±0.25 0.908±0.37 2.318±0.82 1.088±0.05 3.073±0.12 0.393±0.00 2.745±1.40 1.666±0.28 2.577±1.24
ENST00000401787 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000420847 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000428870 1.006±0.00 2.564±0.00 0.888±0.00 0.950±0.00 1.206±0.00 1.315±0.00 0.968±0.00 2.479±0.00 1.199±0.00 1.102±0.00 1.262±0.20 2.182±0.22 1.431±0.00 1.477±0.00
ENST00000438023 N/A N/A 0.480±0.00 N/A N/A N/A N/A N/A N/A 2.002±0.00 N/A N/A N/A N/A
ENST00000466673 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000480996 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 5.228±0.00 N/A
ENST00000489243 N/A N/A N/A 3.575±0.00 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000490806 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000494570 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000495890 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000496464 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000543771 1.249±0.00 1.380±0.00 N/A 0.710±0.00 N/A N/A N/A N/A 1.291±0.00 N/A N/A N/A N/A N/A
ENSG00000137038 ENST00000358227 2.567±0.00 3.604±0.00 1.487±0.00 3.937±0.01 2.650±1.59 2.502±1.52 3.251±1.26 3.439±2.36 0.776±0.24 2.081±0.32 1.846±0.71 3.048±2.13 3.646±1.37 3.279±1.71
ENST00000469050 13.400±0.00 14.626±0.00 N/A 13.414±6.31 18.823±0.00 14.168±9.59 11.300±0.00 16.133±12.47 7.271±5.88 21.376±0.00 17.105±0.00 36.382±5.67 33.135±12.91 26.638±3.88
ENST00000484082 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 7.924±0.00 1.042±0.00 N/A N/A
ENSG00000178654 ENST00000441944 N/A 0.298±0.00 N/A 0.064±0.00 0.060±0.00 0.028±0.00 N/A 0.060±0.00 N/A 0.056±0.00 N/A N/A N/A 0.027±0.00
ENSG00000224972 ENST00000445708 N/A N/A N/A 0.044±0.00 0.104±0.00 0.827±0.00 0.055±0.00 0.578±0.00 0.187±0.00 N/A N/A 0.104±0.00 N/A 0.158±0.00
ENSG00000230207 ENST00000413888 0.229±0.00 0.488±0.00 N/A 0.144±0.00 0.272±0.04 0.264±0.20 0.099±0.00 0.210±0.00 0.123±0.00 0.292±0.00 0.217±0.18 0.379±0.31 0.104±0.03 0.244±0.05
ENSG00000230581 ENST00000446382 0.459±0.00 0.923±0.00 0.250±0.00 0.292±0.00 0.623±0.16 0.753±0.21 0.069±0.01 0.178±0.00 0.155±0.10 0.332±0.14 0.265±0.00 0.125±0.07 N/A 0.252±0.00
ENSG00000273056 ENST00000609091 N/A 0.338±0.00 N/A 0.225±0.00 N/A 0.025±0.00 N/A N/A 0.090±0.00 N/A 0.208±0.00 0.094±0.00 N/A 0.411±0.15
Gene Transcript Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUSG00000028397 ENSMUST00000030102 2.356±0.77 1.152±0.35 4.621±0.03 5.743±2.23 1.817±0.37 1.385±0.46 1.214±0.27 2.201±0.13 1.400±0.71 2.579±0.25 1.777±0.39 2.784±2.55 5.530±1.08 0.864±0.29
ENSMUST00000077851 N/A 0.850±0.00 N/A N/A N/A N/A N/A N/A 0.435±0.11 N/A N/A N/A N/A N/A
ENSMUST00000148753 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUST00000149295 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUST00000150439 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUST00000156065 N/A N/A N/A N/A N/A 0.287±0.00 N/A N/A 0.298±0.00 N/A N/A 1.075±0.24 N/A 0.284±0.00
ENSMUSG00000028398 ENSMUST00000030103 30.881±4.49 52.935±5.38 22.571±4.21 19.334±6.15 45.473±14.55 27.176±3.12 23.919±3.57 31.646±3.83 26.233±6.46 21.773±3.13 28.287±5.39 28.597±7.43 21.948±6.21 16.092±2.37
ENSMUSG00000081067 ENSMUST00000121596 0.039±0.01 0.086±0.00 N/A N/A 0.092±0.04 N/A 0.023±0.00 0.031±0.00 N/A N/A N/A 0.165±0.06 0.070±0.00 0.040±0.03
ENSMUSG00000083659 ENSMUST00000121086 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 0.038±0.00
ENSMUSG00000085482 ENSMUST00000126646 0.101±0.02 0.370±0.00 0.070±0.00 0.203±0.14 0.269±0.04 N/A 0.089±0.00 0.330±0.06 0.106±0.07 0.350±0.10 0.098±0.02 0.280±0.17 0.223±0.11 2.441±1.86

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