C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Gene Info

Description: tropomyosin 2, beta
Gene AccessionGene NameTax IDStrandPositionGene Biotype
ENSMUSG00000028464 Tpm2 10090 - 4:43514711-43523765 protein_coding
  Transcript Accession Transcript Name Position Transcript Biotype
  ENSMUST00000030184 Tpm2-002 43514711-43523464 protein_coding
  ENSMUST00000107913 Tpm2-201 43514712-43523388 protein_coding
  ENSMUST00000107914 Tpm2-001 43514711-43523595 protein_coding
  ENSMUST00000133355 Tpm2-005 43515682-43519669 processed_transcript
  ENSMUST00000150262 Tpm2-003 43514711-43523438 processed_transcript
  ENSMUST00000150592 Tpm2-004 43519668-43523765 protein_coding

Mus musculus EnsemblGRCm38

Genome
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Genes
Gene structures from Ensembl
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Transcripts
Structures from Ensembl
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Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENSMUST00000030184ENSMUST00000107913ENSMUST00000107914ENSMUST00000150262ENSMUST00000150592
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUST00000030184 12.178±11.17 1.983±0.78 N/A 0.639±0.37 92.289±102.89 24.945±4.46 10.132±3.73 5.946±5.16 0.342±0.23 20.248±14.61 N/A 9.119±1.97 N/A 1.325±0.67
ENSMUST00000107913 N/A N/A N/A 1.770±0.83 81.672±40.28 N/A 1.654±0.00 5.728±0.88 2.125±1.94 9.897±0.05 394.057±283.36 N/A 24.963±8.38 N/A
ENSMUST00000107914 43.959±34.45 12.107±4.09 1211.785±146.36 1.951±0.57 8.941±0.77 145.541±25.22 N/A 5.980±0.92 5.145±3.40 18.343±2.12 N/A 93.709±78.79 225.109±140.42 7.705±4.10
ENSMUST00000150262 N/A N/A N/A N/A N/A N/A N/A N/A 0.185±0.00 N/A N/A 10.363±1.79 N/A 1.969±0.00
ENSMUST00000150592 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 202.248±0.00 241.402±89.67 16.742±0.00

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0007BY CIL_0007BY_0002 CGP 4:43506966-43523765
CIL_0007BX CIL_0007BX_0002 CGP 4:43514711-43562691

Gene Ontology
GO IDEvidence TypeGO Description
GO:0003779 IEA actin binding
GO:0005200 TAS structural constituent of cytoskeleton
GO:0005515 IPI protein binding
GO:0005862 TAS muscle thin filament tropomyosin
GO:0006936 TAS muscle contraction
GO:0043462 IEA regulation of ATPase activity

Homologs

ENSEMBL Accession Gene Name Description Biotype Species
ENSDARG00000068385 tpm2 tropomyosin 2 (beta) protein_coding Danio_rerio
ENSG00000198467 TPM2 tropomyosin 2 (beta) protein_coding Homo_sapiens

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