C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: tropomyosin 2, beta
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000030184 Tpm2-002 ENSMUSG00000028464 10090 - 4:43514711-43523464 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBrainBreastColonHeartKidneyLiverLungOvaryTestisENSMUST00000030184
Transcript ID Adipose Adrenal Brain Breast Colon Heart Kidney Liver Lung Ovary Testis
ENSMUST00000030184 12.178±11.17 1.983±0.78 0.639±0.37 92.289±102.89 24.945±4.46 10.132±3.73 5.946±5.16 0.342±0.23 20.248±14.61 9.119±1.97 1.325±0.67

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0007BY CIL_0007BY_0002 CGP 4:43506966-43523765
CIL_0007BX CIL_0007BX_0002 CGP 4:43514711-43562691

Gene Ontology

GO IDEvidence TypeGO Description
GO:0005200 TAS structural constituent of cytoskeleton
GO:0005515 IPI protein binding
GO:0005862 TAS muscle thin filament tropomyosin
GO:0006936 TAS muscle contraction

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENST00000267996 TPM1-005 protein_coding Homo_sapiens 0 307
ENST00000288398 TPM1-001 protein_coding Homo_sapiens 0 512
ENST00000329305 TPM2-006 protein_coding Homo_sapiens 0 1007
ENST00000344824 TPM4-001 protein_coding Homo_sapiens 0 568
ENST00000357980 TPM1-008 protein_coding Homo_sapiens 2e-27 128
ENST00000358278 TPM1-018 protein_coding Homo_sapiens 0 451
ENST00000360958 TPM2-002 protein_coding Homo_sapiens 0 1214
ENST00000378292 TPM2-001 protein_coding Homo_sapiens 0 1175
ENST00000378300 TPM2-005 protein_coding Homo_sapiens 0 1003
ENST00000403994 TPM1-002 protein_coding Homo_sapiens 0 490
ENST00000471212 TPM2-003 retained_intron Homo_sapiens 0 989
ENST00000486018 TPM2-004 retained_intron Homo_sapiens 0 274
ENST00000520558 RP11-756G12.1-001 processed_pseudogene Homo_sapiens 0 257
ENST00000558314 TPM1-006 retained_intron Homo_sapiens 1e-27 128
ENST00000558347 TPM1-009 nonsense_mediated_decay Homo_sapiens 0 311
ENST00000559397 TPM1-010 protein_coding Homo_sapiens 0 329
ENST00000559556 TPM1-028 protein_coding Homo_sapiens 0 429
ENST00000560445 TPM1-019 protein_coding Homo_sapiens 3e-30 135
ENST00000560975 TPM1-007 retained_intron Homo_sapiens 2e-24 119
ENST00000561425 TPM1-020 nonsense_mediated_decay Homo_sapiens 3e-26 122
ENST00000589897 TPM4-007 protein_coding Homo_sapiens 0 219
ENST00000604975 TPM2-007 retained_intron Homo_sapiens 0 340
ENST00000607559 TPM2-008 protein_coding Homo_sapiens 0 285
ENST00000610733 TPM1-034 protein_coding Homo_sapiens 8.96831e-44 183

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