C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Gene Info

Description: tropomyosin 2 (beta)
Gene AccessionGene NameTax IDStrandPositionGene Biotype
ENSG00000198467 TPM2 9606 - 9:35681992-35691020 protein_coding
  Transcript Accession Transcript Name Position Transcript Biotype
  ENST00000329305 TPM2-006 35682014-35689913 protein_coding
  ENST00000360958 TPM2-002 35682930-35689922 protein_coding
  ENST00000378292 TPM2-001 35681992-35691020 protein_coding
  ENST00000378300 TPM2-005 35681992-35689903 protein_coding
  ENST00000471212 TPM2-003 35684251-35689900 retained_intron
  ENST00000486018 TPM2-004 35684751-35685543 retained_intron
  ENST00000604975 TPM2-007 35685145-35689925 retained_intron
  ENST00000607559 TPM2-008 35684041-35685466 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENST00000329305ENST00000360958ENST00000378292ENST00000378300ENST00000471212
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENST00000329305 67.413±0.00 172.965±0.00 N/A 7.251±6.28 N/A 1012.620±0.00 N/A 67.120±0.00 4.334±0.00 213.087±0.00 N/A 64.176±62.80 113.315±32.52 338.993±0.00
ENST00000360958 N/A N/A 1.097±0.00 5.393±3.49 639.662±0.00 N/A 174.846±129.47 N/A N/A N/A 2174.025±147.66 2.791±0.00 N/A 87.146±72.46
ENST00000378292 73.870±0.00 177.410±0.00 2.187±0.00 9.261±7.84 34.404±0.00 592.354±542.54 7.096±0.00 37.146±35.83 73.278±70.50 62.066±56.67 N/A 162.611±142.16 98.451±25.28 171.067±132.46
ENST00000378300 N/A N/A N/A N/A N/A N/A 61.472±0.00 N/A N/A N/A N/A N/A N/A N/A
ENST00000471212 N/A N/A 2.641±0.00 N/A 21.073±0.00 13.547±0.00 N/A 0.751±0.00 N/A 2.833±0.00 N/A 36.119±36.32 N/A N/A

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0007BY CIL_0007BY_0001 CGP 9:35673856-35691020
CIL_0007BX CIL_0007BX_0001 CGP 9:35681992-35732395

Gene Ontology
GO IDEvidence TypeGO Description
GO:0003779 IDA actin binding
GO:0005515 IEA protein binding
GO:0005829 TAS cytosol
GO:0005862 TAS muscle thin filament tropomyosin
GO:0006936 TAS muscle contraction
GO:0008307 TAS structural constituent of muscle
GO:0030049 TAS muscle filament sliding
GO:0043462 IDA regulation of ATPase activity

Homologs

ENSEMBL Accession Gene Name Description Biotype Species
ENSDARG00000068385 tpm2 tropomyosin 2 (beta) protein_coding Danio_rerio
ENSMUSG00000028464 Tpm2 tropomyosin 2, beta protein_coding Mus_musculus

Loading