C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Gene Info

Description: RGP1 retrograde golgi transport homolog (S. cerevisiae)
Gene AccessionGene NameTax IDStrandPositionGene Biotype
ENSMUSG00000028468 Rgp1 10090 + 4:43578715-43587487 protein_coding
  Transcript Accession Transcript Name Position Transcript Biotype
  ENSMUST00000030190 Rgp1-007 43578958-43583130 protein_coding
  ENSMUST00000107886 Rgp1-001 43578715-43587487 protein_coding
  ENSMUST00000117140 Rgp1-006 43578735-43587485 protein_coding
  ENSMUST00000131178 Rgp1-002 43578954-43580923 processed_transcript
  ENSMUST00000135895 Rgp1-003 43578983-43579622 retained_intron
  ENSMUST00000141612 Rgp1-005 43579737-43580919 retained_intron
  ENSMUST00000141782 Rgp1-004 43581214-43581720 retained_intron

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverMuscleOvaryPlacentaTestisENSMUST00000107886
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Muscle Ovary Placenta Testis
ENSMUST00000107886 21.041±2.40 23.180±1.62 15.739±0.00 12.443±3.19 20.290±1.87 23.353±2.59 12.622±1.08 14.451±1.63 11.796±2.40 7.155±1.41 26.921±3.11 23.017±1.86 12.033±1.95

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0007BZ CIL_0007BZ_0002 CGP 4:43562332-43578873
CIL_0007C2 CIL_0007C2_0002 CGP 4:43566928-43587487
CIL_0007C1 CIL_0007C1_0002 CGP 4:43578715-43587487

Gene Ontology
GO IDEvidence TypeGO Description
GO:0005515 IEA protein binding
GO:0005829 ISS cytosol
GO:0016020 ISS membrane
GO:0017112 ISS Rab guanyl-nucleotide exchange factor activity
GO:0017137 ISS Rab GTPase binding
GO:0032851 ISS positive regulation of Rab GTPase activity
GO:0034066 ISS RIC1-RGP1 guanyl-nucleotide exchange factor complex
GO:0042147 ISS retrograde transport, endosome to Golgi
GO:0043234 ISS protein complex
GO:1903363 ISS negative regulation of cellular protein catabolic process

Homologs

ENSEMBL Accession Gene Name Description Biotype Species
ENSDARG00000006545 rgp1 RGP1 retrograde golgi transport homolog (S. cerevisiae) protein_coding Danio_rerio
ENSG00000107185 RGP1 RGP1 retrograde golgi transport homolog (S. cerevisiae) protein_coding Homo_sapiens

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