C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: RGP1 retrograde golgi transport homolog (S. cerevisiae)
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000107886 Rgp1-001 ENSMUSG00000028468 10090 + 4:43578715-43587487 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverMuscleOvaryPlacentaTestisENSMUST00000107886
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Muscle Ovary Placenta Testis
ENSMUST00000107886 21.041±2.40 23.180±1.62 15.739±0.00 12.443±3.19 20.290±1.87 23.353±2.59 12.622±1.08 14.451±1.63 11.796±2.40 7.155±1.41 26.921±3.11 23.017±1.86 12.033±1.95

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0007BZ CIL_0007BZ_0002 CGP 4:43562332-43578873
CIL_0007C2 CIL_0007C2_0002 CGP 4:43566928-43587487
CIL_0007C1 CIL_0007C1_0002 CGP 4:43578715-43587487

Gene Ontology

GO IDEvidence TypeGO Description
GO:0005515 IEA protein binding
GO:0005829 ISS cytosol
GO:0016020 ISS membrane
GO:0017112 ISS Rab guanyl-nucleotide exchange factor activity
GO:0017137 ISS Rab GTPase binding
GO:0032851 ISS positive regulation of Rab GTPase activity
GO:0034066 ISS RIC1-RGP1 guanyl-nucleotide exchange factor complex
GO:0042147 ISS retrograde transport, endosome to Golgi
GO:0043234 ISS protein complex
GO:1903363 ISS negative regulation of cellular protein catabolic process

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENST00000378078 RGP1-001 protein_coding Homo_sapiens 0 1794
ENST00000414286 MSMP-002 processed_transcript Homo_sapiens 0 294
ENST00000436428 MSMP-001 protein_coding Homo_sapiens 0 298
ENST00000496906 RGP1-002 retained_intron Homo_sapiens 0 902

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