C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: ubiquitin specific peptidase 1
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000030289 Usp1-002 ENSMUSG00000028560 10090 + 4:98923810-98935543 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENSMUST00000030289
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUST00000030289 2.304±1.52 4.636±1.09 1.872±0.08 3.206±0.38 3.322±1.04 3.314±0.43 0.472±0.00 1.610±0.87 3.131±3.02 2.744±0.60 1.037±0.41 4.913±2.43 4.327±1.47 20.084±4.82

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0002G2 CIL_0002G2_0002 CGP 4:98923810-99120915

Gene Ontology

GO IDEvidence TypeGO Description
GO:0001501 IMP skeletal system development
GO:0004221 ISS ubiquitin thiolesterase activity
GO:0004843 ISS ubiquitin-specific protease activity
GO:0005515 IEA protein binding
GO:0005634 ISS nucleus
GO:0006281 IEA DNA repair
GO:0006282 ISS regulation of DNA repair
GO:0006511 IEA ubiquitin-dependent protein catabolic process
GO:0009411 ISS response to UV
GO:0016579 ISS protein deubiquitination
GO:0035520 ISS monoubiquitinated protein deubiquitination

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENST00000339950 USP1-001 protein_coding Homo_sapiens 0 3363
ENST00000371146 USP1-201 protein_coding Homo_sapiens 0 3363
ENST00000452143 USP1-002 protein_coding Homo_sapiens 0 693

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