C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Gene Info

Description: zinc finger, CCHC domain containing 17
Gene AccessionGene NameTax IDStrandPositionGene Biotype
ENSMUSG00000028772 Zcchc17 10090 - 4:130315383-130359943 protein_coding
  Transcript Accession Transcript Name Position Transcript Biotype
  ENSMUST00000129840 Zcchc17-002 130336856-130338584 processed_transcript
  ENSMUST00000134159 Zcchc17-001 130315383-130359943 protein_coding
  ENSMUST00000141615 Zcchc17-003 130316279-130318739 processed_transcript
  ENSMUST00000149755 Zcchc17-004 130316695-130344859 processed_transcript
  ENSMUST00000167964 Zcchc17-005 130352168-130359916 retained_intron

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonKidneyLiverLungMuscleOvaryPlacentaTestisENSMUST00000134159ENSMUST00000141615ENSMUST00000149755
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUST00000134159 7.548±0.91 14.565±4.59 4.656±0.94 11.263±3.34 6.391±2.73 8.743±0.82 7.183±0.21 7.387±4.46 6.761±1.99 12.665±0.52 7.943±3.54 13.819±3.21 3.638±0.10
ENSMUST00000141615 5.674±1.12 20.795±3.59 N/A N/A 6.713±0.00 6.594±1.98 N/A 4.114±0.61 N/A N/A 7.552±0.00 N/A N/A
ENSMUST00000149755 N/A N/A N/A 134.582±0.00 N/A N/A N/A 7.143±0.21 N/A N/A 37.324±41.29 191.931±0.00 47.118±0.00

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0002A6 CIL_0002A6_0002 CGP 4:130315383-130390026

Gene Ontology
GO IDEvidence TypeGO Description
GO:0003723 TAS RNA binding
GO:0005730 IDA nucleolus
GO:0008270 IEA zinc ion binding
GO:0022625 IDA cytosolic large ribosomal subunit

Homologs

ENSEMBL Accession Gene Name Description Biotype Species
ENSDARG00000018936 zcchc17 zinc finger, CCHC domain containing 17 protein_coding Danio_rerio
ENSG00000121766 ZCCHC17 zinc finger, CCHC domain containing 17 protein_coding Homo_sapiens

Loading