C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: KH domain containing, RNA binding, signal transduction associated 1
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000066257 Khdrbs1-002 ENSMUSG00000028790 10090 - 4:129713819-129742296 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENSMUST00000066257
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUST00000066257 6.192±3.15 14.040±4.65 9.977±2.17 17.327±8.64 7.456±4.79 8.663±2.98 3.459±0.86 5.361±1.67 6.860±4.84 11.665±1.16 5.521±0.32 13.126±7.01 15.918±7.18 3.613±1.26

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0008AA CIL_0008AA_0002 VISTA 4:129413466-130014337

Gene Ontology

GO IDEvidence TypeGO Description
GO:0003723 ISS RNA binding
GO:0005070 IPI SH3/SH2 adaptor activity
GO:0005515 IPI protein binding
GO:0005634 ISS nucleus
GO:0005737 IEA cytoplasm
GO:0006351 IEA transcription, DNA-templated
GO:0007049 IEA cell cycle
GO:0007166 IDA cell surface receptor signaling pathway
GO:0008143 ISO poly(A) binding
GO:0008266 ISO poly(U) RNA binding
GO:0009967 IPI positive regulation of signal transduction
GO:0016020 ISS membrane
GO:0017124 IEA SH3 domain binding
GO:0032403 IEA protein complex binding
GO:0044822 IEA poly(A) RNA binding
GO:0045892 IDA negative regulation of transcription, DNA-templated
GO:0045948 ISS positive regulation of translational initiation
GO:0046831 IDA regulation of RNA export from nucleus
GO:0046833 ISS positive regulation of RNA export from nucleus
GO:0070618 IEA Grb2-Sos complex

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENST00000281156 KHDRBS2-001 protein_coding Homo_sapiens 2.00386e-43 182
ENST00000307714 KHDRBS1-002 processed_transcript Homo_sapiens 0 1877
ENST00000327300 KHDRBS1-001 protein_coding Homo_sapiens 0 3461
ENST00000484270 KHDRBS1-005 processed_transcript Homo_sapiens 0 1724
ENST00000492989 KHDRBS1-003 protein_coding Homo_sapiens 0 963

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