C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Gene Info

Description: synaptotagmin-like 1
Gene AccessionGene NameTax IDStrandPositionGene Biotype
ENSMUSG00000028860 Sytl1 10090 - 4:133253090-133263113 protein_coding
  Transcript Accession Transcript Name Position Transcript Biotype
  ENSMUST00000030674 Sytl1-001 133253090-133263113 protein_coding
  ENSMUST00000105908 Sytl1-004 133253090-133263087 protein_coding
  ENSMUST00000142039 Sytl1-002 133253098-133263087 processed_transcript
  ENSMUST00000154911 Sytl1-003 133253160-133263052 processed_transcript

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENSMUST00000030674ENSMUST00000105908ENSMUST00000142039ENSMUST00000154911
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUST00000030674 2.070±1.23 0.632±0.25 31.894±5.13 0.697±0.42 7.327±4.27 40.599±7.61 0.216±0.13 1.950±0.89 0.828±0.56 5.856±3.31 0.102±0.05 4.245±1.14 0.574±0.40 0.219±0.11
ENSMUST00000105908 N/A N/A N/A N/A N/A N/A 0.068±0.00 N/A N/A N/A 0.072±0.02 N/A N/A N/A
ENSMUST00000142039 0.163±0.00 0.525±0.25 5.127±0.96 0.099±0.00 3.076±0.36 7.027±1.31 0.079±0.03 0.524±0.24 0.110±0.08 0.724±0.00 0.085±0.00 0.940±0.32 0.149±0.07 0.072±0.02
ENSMUST00000154911 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 0.186±0.00 N/A

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0008WN CIL_0008WN_0002 VISTA 4:132816592-133418424

Gene Ontology
GO IDEvidence TypeGO Description
GO:0005515 IPI protein binding
GO:0005886 IEA plasma membrane
GO:0006886 IEA intracellular protein transport
GO:0006887 IEA exocytosis
GO:0016020 IDA membrane
GO:0017137 IEA Rab GTPase binding
GO:0070062 IEA extracellular vesicular exosome

Homologs

ENSEMBL Accession Gene Name Description Biotype Species
ENSDARG00000070094 SYTL1 synaptotagmin-like 1 protein_coding Danio_rerio
ENSG00000142765 SYTL1 synaptotagmin-like 1 protein_coding Homo_sapiens

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