C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: synaptotagmin-like 1
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000030674 Sytl1-001 ENSMUSG00000028860 10090 - 4:133253090-133263113 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENSMUST00000030674
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUST00000030674 2.070±1.23 0.632±0.25 31.894±5.13 0.697±0.42 7.327±4.27 40.599±7.61 0.216±0.13 1.950±0.89 0.828±0.56 5.856±3.31 0.102±0.05 4.245±1.14 0.574±0.40 0.219±0.11

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0008WN CIL_0008WN_0002 VISTA 4:132816592-133418424

Gene Ontology

GO IDEvidence TypeGO Description
GO:0005515 IPI protein binding
GO:0005886 IEA plasma membrane
GO:0006886 IEA intracellular protein transport
GO:0006887 IEA exocytosis
GO:0016020 IDA membrane
GO:0017137 IEA Rab GTPase binding
GO:0070062 IEA extracellular vesicular exosome

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENST00000318074 SYTL1-001 protein_coding Homo_sapiens 0 1166
ENST00000473280 SYTL1-008 protein_coding Homo_sapiens 0 307
ENST00000475199 SYTL1-005 retained_intron Homo_sapiens 0 440
ENST00000483926 SYTL1-003 retained_intron Homo_sapiens 0 863
ENST00000485269 SYTL1-007 retained_intron Homo_sapiens 0 427
ENST00000490170 SYTL1-004 retained_intron Homo_sapiens 0 553
ENST00000496001 SYTL1-006 retained_intron Homo_sapiens 0 712
ENST00000543823 SYTL1-010 protein_coding Homo_sapiens 0 1535
ENST00000615284 SYTL1-011 retained_intron Homo_sapiens 0 553
ENST00000616558 SYTL1-009 protein_coding Homo_sapiens 0 1576
ENST00000618673 SYTL1-012 protein_coding Homo_sapiens 0 553

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