C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Gene Info

Description: synaptotagmin-like 1
Gene AccessionGene NameTax IDStrandPositionGene Biotype
ENSG00000142765 SYTL1 9606 + 1:27342020-27353937 protein_coding
  Transcript Accession Transcript Name Position Transcript Biotype
  ENST00000318074 SYTL1-001 27342022-27353932 protein_coding
  ENST00000473280 SYTL1-008 27343228-27347458 protein_coding
  ENST00000475199 SYTL1-005 27351472-27353930 retained_intron
  ENST00000483926 SYTL1-003 27342057-27353930 retained_intron
  ENST00000485269 SYTL1-007 27349747-27351579 retained_intron
  ENST00000490170 SYTL1-004 27347544-27353930 retained_intron
  ENST00000496001 SYTL1-006 27349476-27351545 retained_intron
  ENST00000543823 SYTL1-010 27344873-27353930 protein_coding
  ENST00000615284 SYTL1-011 27351075-27353937 retained_intron
  ENST00000616558 SYTL1-009 27342041-27353893 protein_coding
  ENST00000618673 SYTL1-012 27342020-27353901 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENST00000318074ENST00000473280ENST00000475199ENST00000483926ENST00000485269ENST00000490170ENST00000496001ENST00000543823ENST00000615284ENST00000616558ENST00000618673
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENST00000318074 0.148±0.00 N/A N/A N/A 1.316±0.45 N/A N/A 0.920±0.00 N/A 2.670±1.92 N/A N/A N/A N/A
ENST00000473280 N/A N/A N/A N/A N/A 2.184±0.00 N/A N/A 0.485±0.00 N/A N/A 62.567±0.00 19.908±0.00 N/A
ENST00000475199 0.115±0.00 N/A N/A 0.068±0.05 N/A 0.200±0.04 0.148±0.00 0.241±0.00 N/A N/A 0.032±0.00 2.566±0.00 N/A 0.521±0.13
ENST00000483926 N/A N/A N/A N/A N/A 0.151±0.01 N/A N/A N/A 0.387±0.00 N/A N/A N/A N/A
ENST00000485269 N/A N/A 0.961±0.00 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 2.236±0.00
ENST00000490170 N/A 6.829±0.00 N/A 0.247±0.00 0.707±0.00 0.300±0.00 0.200±0.00 N/A N/A 2.715±0.00 N/A 2.212±1.15 0.776±0.00 0.520±0.00
ENST00000496001 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 20.138±0.00 8.690±0.00 N/A
ENST00000543823 0.063±0.00 5.265±0.00 N/A N/A 0.574±0.22 0.327±0.00 0.069±0.00 0.206±0.00 0.425±0.00 N/A N/A 1.461±0.00 0.868±0.00 0.417±0.00
ENST00000615284 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 0.559±0.00 3.210±0.00 N/A 1.249±0.00
ENST00000616558 N/A N/A N/A 0.096±0.00 0.878±0.00 0.362±0.16 N/A 0.297±0.00 0.177±0.00 6.513±0.00 N/A 2.701±0.11 4.864±2.22 0.322±0.00
ENST00000618673 N/A N/A 0.431±0.00 N/A N/A N/A N/A N/A N/A N/A N/A 4.289±0.00 N/A N/A

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0008WN CIL_0008WN_0001 VISTA 1:27203963-27805666

Gene Ontology
GO IDEvidence TypeGO Description
GO:0005515 IPI:IEA protein binding
GO:0005886 IDA plasma membrane
GO:0006886 IEA intracellular protein transport
GO:0006887 IEA:IDA exocytosis
GO:0016020 IEA membrane
GO:0017137 IEA Rab GTPase binding
GO:0019897 ISS extrinsic component of plasma membrane
GO:0042043 ISS neurexin family protein binding
GO:0042470 ISS melanosome
GO:0070062 IDA extracellular vesicular exosome

Homologs

ENSEMBL Accession Gene Name Description Biotype Species
ENSDARG00000070094 SYTL1 synaptotagmin-like 1 protein_coding Danio_rerio
ENSMUSG00000028860 Sytl1 synaptotagmin-like 1 protein_coding Mus_musculus

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