C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: splicing factor 3a, subunit 3
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000030734 Sf3a3-001 ENSMUSG00000028902 10090 + 4:124714776-124732460 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENSMUST00000030734
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUST00000030734 8.103±3.23 2.152±0.97 17.118±2.16 27.828±8.75 5.612±1.10 4.859±1.62 4.291±0.64 6.566±2.40 18.121±16.03 4.848±1.69 5.559±0.35 17.447±19.18 48.844±34.18 20.551±12.77

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0007QK CIL_0007QK_0002 VISTA 4:124155077-124756356
CIL_0008ZP CIL_0008ZP_0002 VISTA 4:124158302-124761497
CIL_0007QI CIL_0007QI_0002 VISTA 4:124177456-124779254
CIL_000892 CIL_000892_0002 VISTA 4:124220131-124821365
CIL_0008EP CIL_0008EP_0002 VISTA 4:124226300-124827138
CIL_0008NZ CIL_0008NZ_0002 VISTA 4:124251046-124852185
CIL_0007UI CIL_0007UI_0002 VISTA 4:124315408-124916812
CIL_00095Y CIL_00095Y_0002 VISTA 4:124371949-124972943

Gene Ontology

GO IDEvidence TypeGO Description
GO:0005515 IEA protein binding
GO:0005681 IEA spliceosomal complex
GO:0006397 IEA mRNA processing
GO:0008270 IEA zinc ion binding
GO:0008380 IEA RNA splicing
GO:0044822 IEA poly(A) RNA binding
GO:0071013 IEA catalytic step 2 spliceosome

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSDART00000078924 sf3a3-201 protein_coding Danio_rerio 0 1094
ENSDART00000141102 sf3a3-001 protein_coding Danio_rerio 0 953
ENST00000373019 SF3A3-001 protein_coding Homo_sapiens 0 2113
ENST00000446317 SF3A3P1-001 processed_pseudogene Homo_sapiens 0 1674
ENST00000460925 SF3A3-004 processed_transcript Homo_sapiens 0 520
ENST00000461869 SF3A3-007 processed_transcript Homo_sapiens 0 710
ENST00000462258 SF3A3-002 processed_transcript Homo_sapiens 0 702
ENST00000470585 SF3A3-005 processed_transcript Homo_sapiens 0 656
ENST00000487062 SF3A3-003 processed_transcript Homo_sapiens 0 207
ENST00000488934 SF3A3-006 processed_transcript Homo_sapiens 0 272
ENST00000489537 SF3A3-008 processed_transcript Homo_sapiens 0 1147
ENST00000528675 SF3A3P2-001 processed_pseudogene Homo_sapiens 0 1788

Loading