C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Gene Info

Description: RER1 retention in endoplasmic reticulum 1 homolog (S. cerevisiae)
Gene AccessionGene NameTax IDStrandPositionGene Biotype
ENSMUSG00000029048 Rer1 10090 - 4:155074110-155086382 protein_coding
  Transcript Accession Transcript Name Position Transcript Biotype
  ENSMUST00000030914 Rer1-001 155074110-155086373 protein_coding
  ENSMUST00000125357 Rer1-003 155082688-155086382 processed_transcript
  ENSMUST00000149796 Rer1-002 155074110-155086371 processed_transcript

Mus musculus EnsemblGRCm38

Genome
Exciting message
Genes
Gene structures from Ensembl
Connecting
Transcripts
Structures from Ensembl
Connecting
Powered by Dalliance 0.11.11

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENSMUST00000030914ENSMUST00000149796
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUST00000030914 45.458±9.63 57.130±9.70 53.808±15.40 14.210±4.34 39.978±22.65 79.894±11.38 28.898±1.45 74.205±21.70 42.241±13.64 59.449±5.73 20.893±9.16 41.770±3.53 59.142±14.34 20.016±8.62
ENSMUST00000149796 10.811±1.58 14.280±3.93 8.710±2.38 4.938±2.81 12.265±1.06 12.114±0.74 6.295±1.02 9.538±1.85 12.850±1.58 9.345±0.68 7.279±0.96 9.322±1.93 12.623±2.70 9.392±1.97

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0007QV CIL_0007QV_0002 VISTA 4:154934679-155536167

Gene Ontology
GO IDEvidence TypeGO Description
GO:0005793 IDA endoplasmic reticulum-Golgi intermediate compartment
GO:0005794 IEA Golgi apparatus
GO:0006890 IEA retrograde vesicle-mediated transport, Golgi to ER
GO:0007528 IMP neuromuscular junction development
GO:0009986 IDA cell surface
GO:0030173 IEA integral component of Golgi membrane
GO:0033130 IPI acetylcholine receptor binding
GO:0071340 IMP skeletal muscle acetylcholine-gated channel clustering
GO:0090004 IMP positive regulation of establishment of protein localization to plasma membrane

Homologs

ENSEMBL Accession Gene Name Description Biotype Species
ENSDARG00000012747 rer1 RER1 retention in endoplasmic reticulum 1 homolog (S. cerevisiae) protein_coding Danio_rerio
ENSG00000157916 RER1 retention in endoplasmic reticulum sorting receptor 1 protein_coding Homo_sapiens

Loading