C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Gene Info

Description: retention in endoplasmic reticulum sorting receptor 1
Gene AccessionGene NameTax IDStrandPositionGene Biotype
ENSG00000157916 RER1 9606 + 1:2391775-2405444 protein_coding
  Transcript Accession Transcript Name Position Transcript Biotype
  ENST00000306256 RER1-008 2391843-2403064 protein_coding
  ENST00000378512 RER1-002 2391890-2403751 protein_coding
  ENST00000378513 RER1-201 2391775-2405442 protein_coding
  ENST00000378518 RER1-004 2391828-2402325 protein_coding
  ENST00000443438 RER1-006 2393174-2402316 protein_coding
  ENST00000462129 RER1-007 2401951-2403227 retained_intron
  ENST00000488353 RER1-003 2394005-2403216 protein_coding
  ENST00000493207 RER1-005 2391857-2396367 retained_intron
  ENST00000605895 RER1-001 2391833-2405444 protein_coding

Homo sapiens EnsemblGRCh38

Genome
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Genes
Gene structures from Ensembl
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Transcripts
Structures from Ensembl
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Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENST00000306256ENST00000378512ENST00000378513ENST00000378518ENST00000443438ENST00000605895
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENST00000306256 27.257±0.00 N/A N/A N/A N/A N/A 16.272±0.00 N/A 53.478±0.00 19.115±0.00 32.768±0.00 N/A N/A 33.109±0.00
ENST00000378512 24.114±0.00 30.371±0.00 3.648±0.00 3.830±0.00 13.207±5.04 9.450±3.93 10.161±7.63 19.845±12.63 26.849±23.12 9.452±6.48 17.032±10.24 26.081±7.52 18.465±0.00 25.238±8.44
ENST00000378513 N/A N/A N/A 3.411±0.00 N/A 1.505±0.00 0.847±0.00 3.963±0.00 1.798±0.00 0.690±0.00 0.678±0.00 N/A N/A N/A
ENST00000378518 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 24.959±0.00 40.958±0.00
ENST00000443438 N/A N/A N/A N/A N/A N/A N/A 12.163±0.00 N/A N/A N/A N/A N/A N/A
ENST00000605895 N/A N/A N/A N/A N/A N/A N/A N/A N/A 0.638±0.00 N/A 6.596±0.00 N/A N/A

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0007QV CIL_0007QV_0001 VISTA 1:1910870-2513425

Gene Ontology
GO IDEvidence TypeGO Description
GO:0003674 ND molecular_function
GO:0005793 IEA endoplasmic reticulum-Golgi intermediate compartment
GO:0005794 IDA Golgi apparatus
GO:0006890 IDA retrograde vesicle-mediated transport, Golgi to ER
GO:0007528 IEA neuromuscular junction development
GO:0009986 IEA cell surface
GO:0016021 IEA integral component of membrane
GO:0030173 IDA integral component of Golgi membrane
GO:0033130 IEA acetylcholine receptor binding
GO:0071340 IEA skeletal muscle acetylcholine-gated channel clustering
GO:0090004 IEA positive regulation of establishment of protein localization to plasma membrane

Homologs

ENSEMBL Accession Gene Name Description Biotype Species
ENSDARG00000012747 rer1 RER1 retention in endoplasmic reticulum 1 homolog (S. cerevisiae) protein_coding Danio_rerio
ENSMUSG00000029048 Rer1 RER1 retention in endoplasmic reticulum 1 homolog (S. cerevisiae) protein_coding Mus_musculus

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