C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Gene Info

Description: protocadherin 7
Gene AccessionGene NameTax IDStrandPositionGene Biotype
ENSMUSG00000029108 Pcdh7 10090 + 5:57718021-58129351 protein_coding
  Transcript Accession Transcript Name Position Transcript Biotype
  ENSMUST00000068110 Pcdh7-201 57718021-57729465 protein_coding
  ENSMUST00000094783 Pcdh7-202 57718021-58129351 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENSMUST00000068110ENSMUST00000094783
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUST00000068110 5.277±2.18 0.618±0.22 5.709±0.12 N/A 3.602±0.60 1.837±0.44 3.951±0.29 1.607±0.18 0.199±0.10 1.485±0.41 0.197±0.07 5.293±1.58 0.709±0.68 0.137±0.09
ENSMUST00000094783 5.433±4.11 0.597±0.20 6.103±0.81 5.513±2.55 1.066±0.47 2.340±0.95 6.359±0.79 0.675±0.37 0.110±0.05 1.035±0.34 0.080±0.02 4.429±1.72 0.464±0.22 0.286±0.07

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_00079S CIL_00079S_0002 CGP 5:53998417-58129351

Gene Ontology
GO IDEvidence TypeGO Description
GO:0005509 IEA calcium ion binding
GO:0005515 IPI protein binding
GO:0005887 ISS integral component of plasma membrane
GO:0007156 IEA homophilic cell adhesion via plasma membrane adhesion molecules
GO:0008150 ND biological_process

Homologs

ENSEMBL Accession Gene Name Description Biotype Species
ENSDARG00000060610 pcdh7b protocadherin 7b protein_coding Danio_rerio
ENSG00000169851 PCDH7 protocadherin 7 protein_coding Homo_sapiens

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