C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Gene Info

Description: protocadherin 7
Gene AccessionGene NameTax IDStrandPositionGene Biotype
ENSG00000169851 PCDH7 9606 + 4:30720415-31146805 protein_coding
  Transcript Accession Transcript Name Position Transcript Biotype
  ENST00000361762 PCDH7-001 30720415-30732973 protein_coding
  ENST00000507864 PCDH7-002 30723050-30724596 processed_transcript
  ENST00000509759 PCDH7-005 30724527-31142954 protein_coding
  ENST00000509925 PCDH7-004 30920153-30987807 processed_transcript
  ENST00000511884 PCDH7-003 30722354-31146805 protein_coding
  ENST00000543491 PCDH7-007 30720853-30725309 protein_coding
  ENST00000610830 PCDH7-009 30925713-30950215 processed_transcript
  ENST00000621961 PCDH7-008 30723480-31143125 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENST00000361762ENST00000509925ENST00000511884ENST00000543491ENST00000621961
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENST00000361762 N/A 0.714±0.00 N/A N/A 0.640±0.42 1.082±0.00 N/A 0.194±0.05 0.031±0.00 N/A N/A 0.467±0.00 N/A N/A
ENST00000509925 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 1.289±0.00 N/A N/A N/A
ENST00000511884 0.061±0.00 2.285±0.00 0.254±0.00 7.683±1.42 1.642±1.07 4.774±2.42 2.357±0.03 0.624±0.46 1.504±1.38 1.283±0.47 0.070±0.01 0.986±0.05 0.011±0.00 0.845±0.70
ENST00000543491 N/A N/A 0.345±0.00 N/A N/A N/A N/A N/A N/A N/A 0.061±0.00 N/A 0.104±0.00 N/A
ENST00000621961 N/A N/A N/A N/A N/A N/A N/A N/A 0.109±0.00 N/A 0.066±0.00 N/A N/A N/A

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_00079S CIL_00079S_0001 CGP 4:26857678-31146805
CIL_0002TS CIL_0002TS_0002 CGP 4:30720415-36244509

Gene Ontology
GO IDEvidence TypeGO Description
GO:0005509 IEA calcium ion binding
GO:0005515 IEA protein binding
GO:0005886 TAS plasma membrane
GO:0005887 TAS integral component of plasma membrane
GO:0007156 IEA homophilic cell adhesion via plasma membrane adhesion molecules
GO:0016020 IEA membrane

Homologs

ENSEMBL Accession Gene Name Description Biotype Species
ENSDARG00000060610 pcdh7b protocadherin 7b protein_coding Danio_rerio
ENSMUSG00000029108 Pcdh7 protocadherin 7 protein_coding Mus_musculus

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