C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: protocadherin 7
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000068110 Pcdh7-201 ENSMUSG00000029108 10090 + 5:57718021-57729465 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENSMUST00000068110
Transcript ID Adipose Adrenal Bladder Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUST00000068110 5.277±2.18 0.618±0.22 5.709±0.12 3.602±0.60 1.837±0.44 3.951±0.29 1.607±0.18 0.199±0.10 1.485±0.41 0.197±0.07 5.293±1.58 0.709±0.68 0.137±0.09

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_00079S CIL_00079S_0002 CGP 5:53998417-58129351

Gene Ontology

GO IDEvidence TypeGO Description
GO:0005509 IEA calcium ion binding
GO:0005515 IPI protein binding
GO:0005887 ISS integral component of plasma membrane
GO:0007156 IEA homophilic cell adhesion via plasma membrane adhesion molecules
GO:0008150 ND biological_process

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENST00000361762 PCDH7-001 protein_coding Homo_sapiens 0 5363
ENST00000507864 PCDH7-002 processed_transcript Homo_sapiens 0 250
ENST00000509759 PCDH7-005 protein_coding Homo_sapiens 2e-23 113
ENST00000511884 PCDH7-003 protein_coding Homo_sapiens 0 3007
ENST00000543491 PCDH7-007 protein_coding Homo_sapiens 0 4680
ENST00000621961 PCDH7-008 protein_coding Homo_sapiens 0 1637

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