C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: general transcription factor IIIC, polypeptide 2, beta
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000088010 Gtf3c2-001 ENSMUSG00000029144 10090 - 5:31156005-31180144 protein_coding

Mus musculus EnsemblGRCm38

Genome
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Genes
Structures from Ensembl
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Transcripts
Structures from Ensembl
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Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeBrainBreastColonKidneyLiverMuscleOvaryPlacentaTestisENSMUST00000088010
Transcript ID Adipose Brain Breast Colon Kidney Liver Muscle Ovary Placenta Testis
ENSMUST00000088010 6.801±0.00 8.280±1.34 7.470±0.00 6.138±0.79 5.914±0.00 6.003±1.40 3.103±0.87 9.969±2.27 5.835±1.79 6.622±2.27

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0001DI CIL_0001DI_0002 CGP 5:31140660-31179911
CIL_0001DH CIL_0001DH_0002 CGP 5:31156005-31193430

Gene Ontology

GO IDEvidence TypeGO Description
GO:0005634 IEA nucleus
GO:0006351 IEA transcription, DNA-templated

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENST00000264720 GTF3C2-201 protein_coding Homo_sapiens 0 3908
ENST00000359541 GTF3C2-001 protein_coding Homo_sapiens 0 3729
ENST00000415683 GTF3C2-010 nonsense_mediated_decay Homo_sapiens 0 575
ENST00000423998 GTF3C2-002 protein_coding Homo_sapiens 0 296
ENST00000431028 GTF3C2-007 protein_coding Homo_sapiens 0 195
ENST00000449584 BRDT-007 protein_coding Homo_sapiens 0.000003 57
ENST00000454704 GTF3C2-009 protein_coding Homo_sapiens 0 1537
ENST00000457098 GTF3C2-012 protein_coding Homo_sapiens 0 407
ENST00000457748 GTF3C2-003 protein_coding Homo_sapiens 0 494
ENST00000470115 GTF3C2-005 retained_intron Homo_sapiens 0 403
ENST00000480989 GTF3C2-004 retained_intron Homo_sapiens 0 505
ENST00000493511 GTF3C2-011 retained_intron Homo_sapiens 0 479
ENST00000495298 GTF3C2-006 retained_intron Homo_sapiens 0 745
ENST00000622534 GTF3C2-202 protein_coding Homo_sapiens 0 2128

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