C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Gene Info

Description: polymerase (RNA) II (DNA directed) polypeptide B
Gene AccessionGene NameTax IDStrandPositionGene Biotype
ENSMUSG00000029250 Polr2b 10090 + 5:77310147-77349324 protein_coding
  Transcript Accession Transcript Name Position Transcript Biotype
  ENSMUST00000031167 Polr2b-001 77310147-77349324 protein_coding
  ENSMUST00000132134 Polr2b-003 77325890-77327108 retained_intron
  ENSMUST00000138121 Polr2b-002 77310491-77313271 retained_intron
  ENSMUST00000150191 Polr2b-004 77340368-77342936 retained_intron

Expression Patterns

Heat Map
Numeric Values
Transcript'; BrainBreastHeartLiverMuscleOvaryPlacentaTestisENSMUST00000031167
Transcript ID Brain Breast Heart Liver Muscle Ovary Placenta Testis
ENSMUST00000031167 21.817±2.51 14.163±0.00 8.561±0.99 16.615±4.45 10.130±0.46 26.100±1.65 23.829±9.13 9.187±0.90

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0008G9 CIL_0008G9_0002 VISTA 5:76829880-77430993
CIL_0003E8 CIL_0003E8_0003 CGP 5:77294182-77349324
CIL_0001WP CIL_0001WP_0002 CGP 5:77310147-77408045

Gene Ontology
GO IDEvidence TypeGO Description
GO:0003677 IEA DNA binding
GO:0003682 IDA chromatin binding
GO:0003899 IEA DNA-directed RNA polymerase activity
GO:0005515 IEA protein binding
GO:0005634 ISS nucleus
GO:0005665 ISS DNA-directed RNA polymerase II, core complex
GO:0006366 ISS transcription from RNA polymerase II promoter
GO:0016020 IEA membrane
GO:0032549 IEA ribonucleoside binding
GO:0044822 IEA poly(A) RNA binding
GO:0046872 IEA metal ion binding

Homologs

ENSEMBL Accession Gene Name Description Biotype Species
ENSDARG00000012592 polr2b polymerase (RNA) II (DNA directed) polypeptide B protein_coding Danio_rerio
ENSG00000047315 POLR2B polymerase (RNA) II (DNA directed) polypeptide B, 140kDa protein_coding Homo_sapiens

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