C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: polymerase (RNA) II (DNA directed) polypeptide B
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000031167 Polr2b-001 ENSMUSG00000029250 10090 + 5:77310147-77349324 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; BrainBreastHeartLiverMuscleOvaryPlacentaTestisENSMUST00000031167
Transcript ID Brain Breast Heart Liver Muscle Ovary Placenta Testis
ENSMUST00000031167 21.817±2.51 14.163±0.00 8.561±0.99 16.615±4.45 10.130±0.46 26.100±1.65 23.829±9.13 9.187±0.90

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0008G9 CIL_0008G9_0002 VISTA 5:76829880-77430993
CIL_0003E8 CIL_0003E8_0003 CGP 5:77294182-77349324
CIL_0001WP CIL_0001WP_0002 CGP 5:77310147-77408045

Gene Ontology

GO IDEvidence TypeGO Description
GO:0003677 IEA DNA binding
GO:0003682 IDA chromatin binding
GO:0003899 IEA DNA-directed RNA polymerase activity
GO:0005515 IEA protein binding
GO:0005634 ISS nucleus
GO:0005665 ISS DNA-directed RNA polymerase II, core complex
GO:0006366 ISS transcription from RNA polymerase II promoter
GO:0016020 IEA membrane
GO:0032549 IEA ribonucleoside binding
GO:0044822 IEA poly(A) RNA binding
GO:0046872 IEA metal ion binding

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENST00000314595 POLR2B-201 protein_coding Homo_sapiens 0 4647
ENST00000381227 POLR2B-001 protein_coding Homo_sapiens 0 4647
ENST00000431623 POLR2B-014 protein_coding Homo_sapiens 0 4333
ENST00000433463 POLR2B-005 protein_coding Homo_sapiens 0 287
ENST00000441246 POLR2B-006 protein_coding Homo_sapiens 0 4614
ENST00000450656 POLR2B-003 protein_coding Homo_sapiens 0 254
ENST00000464918 POLR2B-010 retained_intron Homo_sapiens 0 411
ENST00000478188 POLR2B-002 retained_intron Homo_sapiens 0 2811
ENST00000484821 POLR2B-011 retained_intron Homo_sapiens 0 339
ENST00000510355 POLR2B-008 processed_transcript Homo_sapiens 0 791

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