C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Gene Info

Description: phosphatidylinositol transfer protein, membrane-associated 2
Gene AccessionGene NameTax IDStrandPositionGene Biotype
ENSMUSG00000029406 Pitpnm2 10090 - 5:124118690-124249760 protein_coding
  Transcript Accession Transcript Name Position Transcript Biotype
  ENSMUST00000086123 Pitpnm2-201 124118690-124216418 protein_coding
  ENSMUST00000159010 Pitpnm2-007 124125217-124126632 retained_intron
  ENSMUST00000159628 Pitpnm2-008 124120294-124124554 retained_intron
  ENSMUST00000159677 Pitpnm2-002 124132805-124189747 processed_transcript
  ENSMUST00000161273 Pitpnm2-005 124118691-124249451 protein_coding
  ENSMUST00000161479 Pitpnm2-010 124121075-124122100 retained_intron
  ENSMUST00000161530 Pitpnm2-006 124132978-124140261 retained_intron
  ENSMUST00000161644 Pitpnm2-009 124143606-124185118 protein_coding
  ENSMUST00000161938 Pitpnm2-003 124119747-124187182 protein_coding
  ENSMUST00000162812 Pitpnm2-001 124118690-124249760 protein_coding

Mus musculus EnsemblGRCm38

Genome
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Genes
Gene structures from Ensembl
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Transcripts
Structures from Ensembl
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Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENSMUST00000086123ENSMUST00000159628ENSMUST00000159677ENSMUST00000161273ENSMUST00000161479ENSMUST00000161938ENSMUST00000162812
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUST00000086123 3.345±0.57 9.913±3.15 2.990±0.00 10.004±5.68 5.937±1.41 1.436±0.34 N/A 1.524±0.45 3.286±1.36 8.004±2.95 2.174±0.96 8.875±3.39 4.676±3.01 1.313±0.00
ENSMUST00000159628 N/A N/A N/A 5.166±0.19 N/A 1.693±0.00 N/A N/A 2.227±0.58 N/A N/A 12.219±3.23 N/A N/A
ENSMUST00000159677 N/A N/A N/A 59.009±0.00 N/A N/A N/A N/A N/A N/A N/A 18.905±11.20 8.929±0.16 12.641±0.00
ENSMUST00000161273 3.032±0.04 7.775±1.93 1.913±0.79 N/A 3.182±0.82 1.038±0.05 1.885±0.39 0.920±0.20 N/A 4.888±0.17 1.402±0.31 5.176±0.14 N/A N/A
ENSMUST00000161479 N/A N/A N/A 103.475±0.00 N/A N/A N/A N/A N/A N/A N/A 39.769±0.00 17.522±0.00 N/A
ENSMUST00000161938 3.494±0.80 13.560±2.81 2.233±0.00 2.118±0.00 7.982±3.32 1.553±0.32 N/A N/A N/A 10.332±2.61 N/A 12.182±2.22 0.910±0.14 N/A
ENSMUST00000162812 N/A 4.088±0.21 2.983±0.06 2.149±0.01 4.574±2.47 1.101±0.24 N/A N/A 1.152±0.20 6.139±0.84 N/A 6.755±2.72 1.177±0.00 3.353±0.05

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_00084E CIL_00084E_0002 VISTA 5:123871507-124476501
CIL_0002P7 CIL_0002P7_0002 CGP 5:124116089-124249760
CIL_0003J5 CIL_0003J5_0002 CGP 5:124118690-124327972

Gene Ontology
GO IDEvidence TypeGO Description
GO:0005543 ISA phospholipid binding
GO:0005622 IDA intracellular
GO:0005737 IEA cytoplasm
GO:0005856 IEA cytoskeleton
GO:0006810 IEA transport
GO:0008150 ND biological_process
GO:0016020 IEA membrane
GO:0043231 IEA intracellular membrane-bounded organelle
GO:0046872 IEA metal ion binding

Homologs

ENSEMBL Accession Gene Name Description Biotype Species
ENSDARG00000089101 plrdgb PITP-less RdgB-like protein protein_coding Danio_rerio
ENSG00000090975 PITPNM2 phosphatidylinositol transfer protein, membrane-associated 2 protein_coding Homo_sapiens

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