C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: phosphatidylinositol transfer protein, membrane-associated 2
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000162812 Pitpnm2-001 ENSMUSG00000029406 10090 - 5:124118690-124249760 protein_coding

Mus musculus EnsemblGRCm38

Genome
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Genes
Structures from Ensembl
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Transcripts
Structures from Ensembl
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Expression Patterns

Heat Map
Numeric Values
Transcript'; AdrenalBladderBrainBreastColonLiverLungOvaryPlacentaTestisENSMUST00000162812
Transcript ID Adrenal Bladder Brain Breast Colon Liver Lung Ovary Placenta Testis
ENSMUST00000162812 4.088±0.21 2.983±0.06 2.149±0.01 4.574±2.47 1.101±0.24 1.152±0.20 6.139±0.84 6.755±2.72 1.177±0.00 3.353±0.05

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_00084E CIL_00084E_0002 VISTA 5:123871507-124476501
CIL_0002P7 CIL_0002P7_0002 CGP 5:124116089-124249760
CIL_0003J5 CIL_0003J5_0002 CGP 5:124118690-124327972

Gene Ontology

GO IDEvidence TypeGO Description
GO:0005543 ISA phospholipid binding
GO:0005622 IDA intracellular
GO:0005737 IEA cytoplasm
GO:0005856 IEA cytoskeleton
GO:0006810 IEA transport
GO:0008150 ND biological_process
GO:0016020 IEA membrane
GO:0046872 IEA metal ion binding

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENST00000280562 PITPNM2-001 protein_coding Homo_sapiens 0 2004
ENST00000320201 PITPNM2-201 protein_coding Homo_sapiens 0 1984
ENST00000356404 PITPNM1-201 protein_coding Homo_sapiens 0 361
ENST00000436074 PITPNM2-009 retained_intron Homo_sapiens 0 573
ENST00000436757 PITPNM1-001 protein_coding Homo_sapiens 0 361
ENST00000451868 PITPNM2-002 processed_transcript Homo_sapiens 0 1234
ENST00000525568 PITPNM1-011 retained_intron Homo_sapiens 1e-22 110
ENST00000526450 PITPNM1-015 retained_intron Homo_sapiens 0 239
ENST00000527370 PITPNM1-003 retained_intron Homo_sapiens 0 361
ENST00000534749 PITPNM1-002 protein_coding Homo_sapiens 0 361
ENST00000542210 PITPNM2-007 protein_coding Homo_sapiens 0 228
ENST00000542749 PITPNM2-005 protein_coding Homo_sapiens 0 1962
ENST00000546049 PITPNM2-003 protein_coding Homo_sapiens 0 996

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