C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Gene Info

Description: GPN-loop GTPase 3
Gene AccessionGene NameTax IDStrandPositionGene Biotype
ENSMUSG00000029464 Gpn3 10090 + 5:122371876-122382902 protein_coding
  Transcript Accession Transcript Name Position Transcript Biotype
  ENSMUST00000031420 Gpn3-001 122372451-122382902 protein_coding
  ENSMUST00000123537 Gpn3-004 122373985-122382299 nonsense_mediated_decay
  ENSMUST00000127608 Gpn3-002 122371876-122382841 retained_intron
  ENSMUST00000146698 Gpn3-005 122381268-122382902 nonsense_mediated_decay
  ENSMUST00000151173 Gpn3-006 122381293-122382532 protein_coding
  ENSMUST00000156978 Gpn3-003 122372570-122378727 retained_intron

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENSMUST00000031420ENSMUST00000123537ENSMUST00000127608ENSMUST00000156978
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUST00000031420 7.065±0.51 7.911±1.04 11.802±0.13 N/A 9.506±1.20 11.776±2.21 7.113±1.55 9.765±0.82 17.205±10.79 13.220±0.86 9.704±0.96 9.643±1.70 16.031±4.64 N/A
ENSMUST00000123537 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 12.191±0.00 16.606±0.00 N/A
ENSMUST00000127608 N/A 9.235±0.22 5.766±0.00 14.562±3.96 4.464±0.83 N/A 2.400±0.11 5.646±0.78 6.002±0.00 5.839±0.67 N/A 7.650±1.30 N/A 22.499±1.61
ENSMUST00000156978 N/A 28.778±6.16 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0008YU CIL_0008YU_0002 VISTA 5:121792218-122394768
CIL_0004MV CIL_0004MV_0002 CGP 5:122371876-122406179

Gene Ontology
GO IDEvidence TypeGO Description
GO:0003674 ND molecular_function
GO:0005525 IEA GTP binding
GO:0008150 ND biological_process
GO:0043234 IEA protein complex

Homologs

ENSEMBL Accession Gene Name Description Biotype Species
ENSDARG00000069525 gpn3 GPN-loop GTPase 3 protein_coding Danio_rerio
ENSG00000111231 GPN3 GPN-loop GTPase 3 protein_coding Homo_sapiens

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