C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Region Summary
CIL_0004MV_0001 (Click to Hide/Show)
Source ID Type Tax ID Position
ENSDARG00000069525-ENSDARG00000057882 CGP 7955 21:15527922-15541049
GeneTranscriptPositionBiotype
ENSDARG00000057882 (arpc3)
actin related protein 2/3 complex, subunit 3 		ENSDART00000080628 (arpc3-001) 15535587-15541049 protein_coding
ENSDARG00000069525 (gpn3)
GPN-loop GTPase 3 		ENSDART00000065755 (gpn3-001) 15527922-15534239 protein_coding
CIL_0004MV_0002 (Click to Hide/Show)
Source ID Type Tax ID Position
ENSMUSG00000029464-ENSMUSG00000029465 CGP 10090 5:122371876-122406179
GeneTranscriptPositionBiotype
ENSMUSG00000029463 (Fam216a)
family with sequence similarity 216, member A 		ENSMUST00000031419 (Fam216a-001) 122364580-122372364 protein_coding
ENSMUSG00000029464 (Gpn3)
GPN-loop GTPase 3 		ENSMUST00000031420 (Gpn3-001) 122372451-122382902 protein_coding
ENSMUST00000123537 (Gpn3-004) 122373985-122382299 nonsense_mediated_decay
ENSMUST00000127608 (Gpn3-002) 122371876-122382841 retained_intron
ENSMUST00000146698 (Gpn3-005) 122381268-122382902 nonsense_mediated_decay
ENSMUST00000151173 (Gpn3-006) 122381293-122382532 protein_coding
ENSMUST00000156978 (Gpn3-003) 122372570-122378727 retained_intron
ENSMUSG00000029465 (Arpc3)
actin related protein 2/3 complex, subunit 3 		ENSMUST00000031421 (Arpc3-002) 122395814-122406063 protein_coding
ENSMUST00000102525 (Arpc3-001) 122391878-122406179 protein_coding
ENSMUST00000111713 (Arpc3-004) 122400398-122406137 protein_coding
ENSMUST00000111716 (Arpc3-003) 122400271-122406146 protein_coding
ENSMUST00000126247 (Arpc3-007) 122403414-122404781 retained_intron
ENSMUST00000141395 (Arpc3-006) 122391966-122397193 retained_intron
ENSMUST00000148913 (Arpc3-005) 122391922-122402326 retained_intron

Expression Patterns

Heat Map
Heat Map (Expressed Only)
Numeric Values
Region; Gene Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisCIL_0004MV_0001ENSDARG00000057882ENSDART00000080628ENSDARG00000069525ENSDART00000065755CIL_0004MV_0002ENSMUSG00000029463ENSMUST00000031419ENSMUSG00000029464ENSMUST00000031420ENSMUST00000123537ENSMUST00000127608ENSMUST00000146698ENSMUST00000151173ENSMUST00000156978ENSMUSG00000029465ENSMUST00000031421ENSMUST00000102525ENSMUST00000111713ENSMUST00000111716ENSMUST00000126247ENSMUST00000141395ENSMUST00000148913
Region; Gene Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisCIL_0004MV_0001ENSDARG00000057882ENSDART00000080628ENSDARG00000069525ENSDART00000065755CIL_0004MV_0002ENSMUSG00000029463ENSMUST00000031419ENSMUSG00000029464ENSMUST00000031420ENSMUST00000123537ENSMUST00000127608ENSMUST00000156978ENSMUSG00000029465ENSMUST00000031421ENSMUST00000102525ENSMUST00000111713ENSMUST00000148913
Gene Transcript Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSDARG00000057882 ENSDART00000080628 N/A N/A N/A 46.194±27.56 N/A N/A 30.408±23.36 79.189±46.43 2.053±0.00 N/A 25.561±0.00 N/A N/A N/A
ENSDARG00000069525 ENSDART00000065755 N/A N/A N/A 5.061±1.67 N/A N/A 6.398±2.32 10.114±0.00 0.900±0.00 N/A 7.591±0.00 N/A N/A N/A
Gene Transcript Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUSG00000029463 ENSMUST00000031419 12.228±1.27 11.404±1.35 13.238±0.01 60.230±41.45 12.860±5.97 4.351±0.33 5.746±0.78 12.989±2.37 10.535±6.94 11.273±1.79 N/A 19.330±5.47 13.226±2.22 59.054±20.74
ENSMUSG00000029464 ENSMUST00000031420 7.065±0.51 7.911±1.04 11.802±0.13 N/A 9.506±1.20 11.776±2.21 7.113±1.55 9.765±0.82 17.205±10.79 13.220±0.86 9.704±0.96 9.643±1.70 16.031±4.64 N/A
ENSMUST00000123537 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 12.191±0.00 16.606±0.00 N/A
ENSMUST00000127608 N/A 9.235±0.22 5.766±0.00 14.562±3.96 4.464±0.83 N/A 2.400±0.11 5.646±0.78 6.002±0.00 5.839±0.67 N/A 7.650±1.30 N/A 22.499±1.61
ENSMUST00000146698 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUST00000151173 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUST00000156978 N/A 28.778±6.16 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUSG00000029465 ENSMUST00000031421 N/A N/A N/A 49.234±0.00 17.822±0.00 N/A N/A N/A 36.980±0.00 N/A N/A 68.785±23.84 114.116±59.17 5.188±0.00
ENSMUST00000102525 68.350±12.73 44.429±16.11 80.701±13.32 61.988±35.33 34.125±18.18 86.649±19.92 38.009±5.60 51.704±16.86 70.627±34.53 57.796±14.35 30.100±1.92 45.340±10.75 110.123±16.03 13.339±5.46
ENSMUST00000111713 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 27.930±0.00 N/A N/A
ENSMUST00000111716 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUST00000126247 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUST00000141395 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUST00000148913 N/A 49.503±8.92 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A

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