C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Gene Info

Description: calcium binding protein 1
Gene AccessionGene NameTax IDStrandPositionGene Biotype
ENSMUSG00000029544 Cabp1 10090 - 5:115168689-115194381 protein_coding
  Transcript Accession Transcript Name Position Transcript Biotype
  ENSMUST00000031519 Cabp1-001 115168689-115186308 protein_coding
  ENSMUST00000112109 Cabp1-006 115168714-115181422 protein_coding
  ENSMUST00000112112 Cabp1-003 115168946-115186121 protein_coding
  ENSMUST00000112113 Cabp1-004 115168689-115194381 protein_coding
  ENSMUST00000145197 Cabp1-002 115168971-115186056 nonsense_mediated_decay
  ENSMUST00000151775 Cabp1-005 115172881-115181259 processed_transcript

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonKidneyLiverLungMuscleOvaryPlacentaTestisENSMUST00000031519ENSMUST00000112109ENSMUST00000112112ENSMUST00000112113ENSMUST00000145197ENSMUST00000151775
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUST00000031519 N/A N/A N/A N/A 0.127±0.05 0.295±0.05 0.108±0.00 0.032±0.00 0.326±0.06 0.152±0.04 N/A 0.252±0.13 N/A
ENSMUST00000112109 N/A N/A N/A N/A N/A N/A 0.260±0.00 0.099±0.00 N/A 0.260±0.13 N/A 0.704±0.00 N/A
ENSMUST00000112112 0.492±0.00 N/A N/A 147.594±143.86 0.303±0.00 N/A 0.201±0.00 0.050±0.00 N/A 0.267±0.04 12.275±9.87 1.648±1.54 12.642±0.00
ENSMUST00000112113 N/A 13.796±5.03 N/A 27.557±31.63 0.061±0.01 0.367±0.08 0.110±0.04 N/A 0.103±0.00 N/A 1.718±0.89 0.118±0.00 1.006±0.24
ENSMUST00000145197 N/A N/A 0.698±0.00 N/A 0.280±0.10 N/A N/A 0.100±0.06 N/A 0.458±0.17 4.509±0.00 0.267±0.00 N/A
ENSMUST00000151775 N/A N/A N/A N/A 0.418±0.00 0.351±0.12 0.381±0.13 0.102±0.08 0.629±0.00 0.466±0.28 1.977±0.65 0.194±0.00 N/A

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0007ZA CIL_0007ZA_0002 VISTA 5:114966986-115567561
CIL_0004YW CIL_0004YW_0002 CGP 5:115142981-115194381

Gene Ontology
GO IDEvidence TypeGO Description
GO:0000139 IEA Golgi membrane
GO:0005509 IEA calcium ion binding
GO:0005515 IEA protein binding
GO:0005615 IEA extracellular space
GO:0005634 IEA nucleus
GO:0005737 IEA cytoplasm
GO:0005829 IEA cytosol
GO:0005856 IEA cytoskeleton
GO:0005886 IEA plasma membrane
GO:0008139 ISS nuclear localization sequence binding
GO:0009898 IEA cytoplasmic side of plasma membrane
GO:0010651 IEA negative regulation of cell communication by electrical coupling
GO:0014069 IEA postsynaptic density
GO:0019904 IEA protein domain specific binding
GO:0030425 IEA dendrite
GO:0031800 IEA type 3 metabotropic glutamate receptor binding
GO:0042308 ISS negative regulation of protein import into nucleus
GO:0042803 IEA protein homodimerization activity
GO:0043025 IEA neuronal cell body
GO:0043234 IEA protein complex
GO:0044325 IEA ion channel binding
GO:0048306 ISS calcium-dependent protein binding
GO:0048471 IEA perinuclear region of cytoplasm
GO:1901385 IEA regulation of voltage-gated calcium channel activity
GO:1901386 IEA negative regulation of voltage-gated calcium channel activity

Homologs

ENSEMBL Accession Gene Name Description Biotype Species
ENSDARG00000019990 cabp1a calcium binding protein 1a protein_coding Danio_rerio
ENSDARG00000033411 cabp1b calcium binding protein 1b protein_coding Danio_rerio
ENSG00000157782 CABP1 calcium binding protein 1 protein_coding Homo_sapiens

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