C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: calcium binding protein 1
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000112112 Cabp1-003 ENSMUSG00000029544 10090 - 5:115168946-115186121 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeBrainBreastKidneyLiverMuscleOvaryPlacentaTestisENSMUST00000112112
Transcript ID Adipose Brain Breast Kidney Liver Muscle Ovary Placenta Testis
ENSMUST00000112112 0.492±0.00 147.594±143.86 0.303±0.00 0.201±0.00 0.050±0.00 0.267±0.04 12.275±9.87 1.648±1.54 12.642±0.00

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0007ZA CIL_0007ZA_0002 VISTA 5:114966986-115567561
CIL_0004YW CIL_0004YW_0002 CGP 5:115142981-115194381

Gene Ontology

GO IDEvidence TypeGO Description
GO:0008139 ISS nuclear localization sequence binding
GO:0042308 ISS negative regulation of protein import into nucleus
GO:0048306 ISS calcium-dependent protein binding

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSDART00000018528 cabp5a-201 protein_coding Danio_rerio 0 198
ENSDART00000144067 cabp5a-001 protein_coding Danio_rerio 0 198
ENST00000288616 CABP1-003 protein_coding Homo_sapiens 0 758
ENST00000294288 CABP2-002 protein_coding Homo_sapiens 0 204
ENST00000316803 CABP1-001 protein_coding Homo_sapiens 0 828
ENST00000325656 CABP4-001 protein_coding Homo_sapiens 4e-30 137
ENST00000351200 CABP1-002 protein_coding Homo_sapiens 0 865
ENST00000353903 CABP2-003 protein_coding Homo_sapiens 0 204
ENST00000438189 CABP4-002 protein_coding Homo_sapiens 2e-30 137
ENST00000453000 CABP1-004 protein_coding Homo_sapiens 0 824
ENST00000498082 CABP1-005 retained_intron Homo_sapiens 0 346
ENST00000545205 CABP2-001 nonsense_mediated_decay Homo_sapiens 0 204
ENST00000545777 CABP4-006 nonsense_mediated_decay Homo_sapiens 3e-16 90

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