C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: calcium binding protein 1
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000031519 Cabp1-001 ENSMUSG00000029544 10090 - 5:115168689-115186308 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; BreastColonKidneyLiverLungMusclePlacentaENSMUST00000031519
Transcript ID Breast Colon Kidney Liver Lung Muscle Placenta
ENSMUST00000031519 0.127±0.05 0.295±0.05 0.108±0.00 0.032±0.00 0.326±0.06 0.152±0.04 0.252±0.13

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0007ZA CIL_0007ZA_0002 VISTA 5:114966986-115567561
CIL_0004YW CIL_0004YW_0002 CGP 5:115142981-115194381

Gene Ontology

GO IDEvidence TypeGO Description
GO:0000139 IEA Golgi membrane
GO:0005515 IEA protein binding
GO:0005615 IEA extracellular space
GO:0005634 IEA nucleus
GO:0005737 IEA cytoplasm
GO:0005829 IEA cytosol
GO:0005856 IEA cytoskeleton
GO:0005886 IEA plasma membrane
GO:0008139 ISS nuclear localization sequence binding
GO:0009898 IEA cytoplasmic side of plasma membrane
GO:0010651 IEA negative regulation of cell communication by electrical coupling
GO:0014069 IEA postsynaptic density
GO:0019904 IEA protein domain specific binding
GO:0030425 IEA dendrite
GO:0031800 IEA type 3 metabotropic glutamate receptor binding
GO:0042308 ISS negative regulation of protein import into nucleus
GO:0042803 IEA protein homodimerization activity
GO:0043025 IEA neuronal cell body
GO:0043234 IEA protein complex
GO:0044325 IEA ion channel binding
GO:0048306 ISS calcium-dependent protein binding
GO:0048471 IEA perinuclear region of cytoplasm
GO:1901385 IEA regulation of voltage-gated calcium channel activity
GO:1901386 IEA negative regulation of voltage-gated calcium channel activity

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSDART00000018528 cabp5a-201 protein_coding Danio_rerio 0 198
ENSDART00000144067 cabp5a-001 protein_coding Danio_rerio 0 198
ENST00000288616 CABP1-003 protein_coding Homo_sapiens 0 1059
ENST00000294288 CABP2-002 protein_coding Homo_sapiens 0 204
ENST00000316803 CABP1-001 protein_coding Homo_sapiens 0 1079
ENST00000325656 CABP4-001 protein_coding Homo_sapiens 4e-30 137
ENST00000351200 CABP1-002 protein_coding Homo_sapiens 0 763
ENST00000353903 CABP2-003 protein_coding Homo_sapiens 0 204
ENST00000438189 CABP4-002 protein_coding Homo_sapiens 2e-30 137
ENST00000453000 CABP1-004 protein_coding Homo_sapiens 0 1284
ENST00000498082 CABP1-005 retained_intron Homo_sapiens 0 346
ENST00000545205 CABP2-001 nonsense_mediated_decay Homo_sapiens 0 204
ENST00000545777 CABP4-006 nonsense_mediated_decay Homo_sapiens 3e-16 90

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