C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Gene Info

Description: ubiquitin specific peptidase 12
Gene AccessionGene NameTax IDStrandPositionGene Biotype
ENSMUSG00000029640 Usp12 10090 - 5:146734809-146795006 protein_coding
  Transcript Accession Transcript Name Position Transcript Biotype
  ENSMUST00000085614 Usp12-001 146734809-146795006 protein_coding
  ENSMUST00000124009 Usp12-003 146740431-146758456 processed_transcript
  ENSMUST00000138202 Usp12-002 146734839-146758448 processed_transcript

Mus musculus EnsemblGRCm38

Genome
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Genes
Gene structures from Ensembl
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Transcripts
Structures from Ensembl
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Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENSMUST00000085614ENSMUST00000138202
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUST00000085614 6.658±3.01 3.572±1.13 6.834±0.04 6.139±0.94 3.829±0.69 10.010±1.82 2.891±0.82 8.889±1.83 5.280±1.54 7.591±1.19 4.376±0.40 6.126±1.45 14.196±8.32 15.690±3.60
ENSMUST00000138202 N/A 1.603±0.11 N/A N/A 2.372±0.33 1.744±0.00 N/A 5.104±0.00 0.826±0.00 3.544±0.00 N/A 1.424±0.37 N/A N/A

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0000G9 CIL_0000G9_0003 CGP 5:146582151-146795006
CIL_0000GA CIL_0000GA_0003 CGP 5:146734809-146837032

Gene Ontology
GO IDEvidence TypeGO Description
GO:0004197 ISS cysteine-type endopeptidase activity
GO:0004221 ISS ubiquitin thiolesterase activity
GO:0004843 ISS ubiquitin-specific protease activity
GO:0005515 IEA protein binding
GO:0006511 IEA ubiquitin-dependent protein catabolic process
GO:0016579 ISS protein deubiquitination

Homologs

ENSEMBL Accession Gene Name Description Biotype Species
ENSDARG00000078109 usp12a ubiquitin specific peptidase 12a protein_coding Danio_rerio
ENSG00000152484 USP12 ubiquitin specific peptidase 12 protein_coding Homo_sapiens

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