C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: ubiquitin specific peptidase 12
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000085614 Usp12-001 ENSMUSG00000029640 10090 - 5:146734809-146795006 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENSMUST00000085614
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUST00000085614 6.658±3.01 3.572±1.13 6.834±0.04 6.139±0.94 3.829±0.69 10.010±1.82 2.891±0.82 8.889±1.83 5.280±1.54 7.591±1.19 4.376±0.40 6.126±1.45 14.196±8.32 15.690±3.60

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0000G9 CIL_0000G9_0003 CGP 5:146582151-146795006
CIL_0000GA CIL_0000GA_0003 CGP 5:146734809-146837032

Gene Ontology

GO IDEvidence TypeGO Description
GO:0004197 ISS cysteine-type endopeptidase activity
GO:0004221 ISS ubiquitin thiolesterase activity
GO:0004843 ISS ubiquitin-specific protease activity
GO:0005515 IEA protein binding
GO:0006511 IEA ubiquitin-dependent protein catabolic process
GO:0016579 ISS protein deubiquitination

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENST00000264436 ADD2-001 protein_coding Homo_sapiens 0.0006 53
ENST00000282344 USP12-001 protein_coding Homo_sapiens 0 2008
ENST00000334256 KPNA4-001 protein_coding Homo_sapiens 0.0006 53
ENST00000360639 C15orf39-001 protein_coding Homo_sapiens 0.0003 53
ENST00000394987 C15orf39-002 protein_coding Homo_sapiens 0.0003 53
ENST00000407644 ADD2-008 protein_coding Homo_sapiens 0.0002 53
ENST00000427677 USP12PY-001 processed_pseudogene Homo_sapiens 0 1232
ENST00000432383 USP12PX-001 processed_pseudogene Homo_sapiens 0 1269
ENST00000523223 RP11-546B8.3-001 processed_pseudogene Homo_sapiens 0 924
ENST00000567617 C15orf39-004 protein_coding Homo_sapiens 0.0003 53
ENST00000612674 USP12-002 protein_coding Homo_sapiens 0 375
ENST00000620323 USP12-003 protein_coding Homo_sapiens 2e-25 119

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