C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Region Summary
CIL_0000GA_0001 (Click to Hide/Show)
Source ID Type Tax ID Position
ENSDARG00000078109-ENSDARG00000010516 CGP 7955 24:22208268-22233473
GeneTranscriptPositionBiotype
ENSDARG00000010516 (rpl21)
ribosomal protein L21 		ENSDART00000002595 (rpl21-001) 22229602-22233473 protein_coding
ENSDARG00000078109 (usp12a)
ubiquitin specific peptidase 12a 		ENSDART00000112670 (usp12a-001) 22208268-22228264 protein_coding
ENSDART00000146823 (usp12a-002) 22219550-22228204 retained_intron

Danio rerio Ensembl (Zv9)

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CIL_0000GA_0002 (Click to Hide/Show)
Source ID Type Tax ID Position
ENSG00000152484-ENSG00000122026 CGP 9606 13:27066142-27256691
GeneTranscriptPositionBiotype
ENSG00000122026 (RPL21)
ribosomal protein L21 		ENST00000272274 (RPL21-003) 27251579-27256568 protein_coding
ENST00000311549 (RPL21-001) 27251309-27256568 protein_coding
ENST00000319826 (RPL21-004) 27251583-27256568 protein_coding
ENST00000326092 (RPL21-005) 27251597-27256568 protein_coding
ENST00000461690 (RPL21-007) 27251561-27256691 nonsense_mediated_decay
ENST00000466550 (RPL21-006) 27253765-27255856 retained_intron
ENST00000473558 (RPL21-002) 27251362-27254467 retained_intron
ENST00000483765 (RPL21-008) 27253765-27256545 nonsense_mediated_decay
ENST00000485756 (RPL21-010) 27254944-27256548 retained_intron
ENST00000493317 (RPL21-009) 27253705-27256307 protein_coding
ENSG00000152484 (USP12)
ubiquitin specific peptidase 12 		ENST00000282344 (USP12-001) 27066142-27171896 protein_coding
ENST00000612674 (USP12-002) 27089438-27095706 protein_coding
ENST00000620323 (USP12-003) 27170091-27171701 protein_coding
ENSG00000230641 (USP12-AS2)
USP12 antisense RNA 2 (head to head) 		ENST00000452222 (USP12-AS2-001) 27172259-27182998 antisense
ENSG00000232162 (USP12-AS1)
USP12 antisense RNA 1 		ENST00000440657 (USP12-AS1-001) 27162855-27169135 antisense
ENSG00000234772 (LINC00412)
long intergenic non-protein coding RNA 412 		ENST00000444744 (LINC00412-001) 27236282-27236811 antisense
ENSG00000275294 (RP11-428O18.6)
 ENST00000610335 (RP11-428O18.6-002) 27178263-27208001 lincRNA
ENST00000620494 (RP11-428O18.6-001) 27203087-27251288 lincRNA
ENSG00000278496 (RP11-144H23.2)
 ENST00000619632 (RP11-144H23.2-001) 27077218-27077962 unprocessed_pseudogene

Homo sapiens Ensembl (GRCh38)

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CIL_0000GA_0003 (Click to Hide/Show)
Source ID Type Tax ID Position
ENSMUSG00000029640-ENSMUSG00000041453 CGP 10090 5:146734809-146837032
GeneTranscriptPositionBiotype
ENSMUSG00000029640 (Usp12)
ubiquitin specific peptidase 12 		ENSMUST00000085614 (Usp12-001) 146734809-146795006 protein_coding
ENSMUST00000124009 (Usp12-003) 146740431-146758456 processed_transcript
ENSMUST00000138202 (Usp12-002) 146734839-146758448 processed_transcript
ENSMUSG00000041453 (Rpl21)
ribosomal protein L21 		ENSMUST00000035983 (Rpl21-001) 146832890-146837032 protein_coding
ENSMUST00000075453 (Rpl21-002) 146833195-146835985 protein_coding
ENSMUST00000099272 (Rpl21-003) 146833202-146835986 protein_coding
ENSMUST00000135345 (Rpl21-006) 146835206-146835986 retained_intron
ENSMUST00000151871 (Rpl21-005) 146834184-146834964 retained_intron
ENSMUST00000154768 (Rpl21-004) 146833146-146834605 retained_intron

Mus musculus Ensembl (GRCm38)

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Expression Patterns

Heat Map
Heat Map (Expressed Only)
Numeric Values
Region; Gene Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisCIL_0000GA_0001ENSDARG00000010516ENSDART00000002595ENSDARG00000078109ENSDART00000112670ENSDART00000146823CIL_0000GA_0002ENSG00000122026ENST00000272274ENST00000311549ENST00000319826ENST00000326092ENST00000461690ENST00000466550ENST00000473558ENST00000483765ENST00000485756ENST00000493317ENSG00000152484ENST00000282344ENST00000612674ENST00000620323ENSG00000230641ENST00000452222ENSG00000232162ENST00000440657ENSG00000234772ENST00000444744ENSG00000275294ENST00000610335ENST00000620494ENSG00000278496ENST00000619632CIL_0000GA_0003ENSMUSG00000029640ENSMUST00000085614ENSMUST00000124009ENSMUST00000138202ENSMUSG00000041453ENSMUST00000035983ENSMUST00000075453ENSMUST00000099272ENSMUST00000135345ENSMUST00000151871ENSMUST00000154768
Region; Gene Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisCIL_0000GA_0001ENSDARG00000010516ENSDART00000002595ENSDARG00000078109ENSDART00000112670CIL_0000GA_0002ENSG00000122026ENST00000272274ENST00000311549ENST00000319826ENST00000461690ENST00000483765ENSG00000152484ENST00000282344ENSG00000230641ENST00000452222ENSG00000232162ENST00000440657ENSG00000234772ENST00000444744ENSG00000275294ENST00000610335ENST00000620494ENSG00000278496ENST00000619632CIL_0000GA_0003ENSMUSG00000029640ENSMUST00000085614ENSMUST00000138202ENSMUSG00000041453ENSMUST00000035983ENSMUST00000075453ENSMUST00000099272
Gene Transcript Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSDARG00000010516 ENSDART00000002595 N/A N/A N/A 175.860±177.23 N/A N/A 772.510±852.49 511.227±719.39 848.072±0.00 N/A 975.831±0.00 N/A N/A N/A
ENSDARG00000078109 ENSDART00000112670 N/A N/A N/A 10.422±8.35 N/A N/A 3.549±2.27 3.312±0.78 0.825±0.00 N/A 4.323±0.00 N/A N/A N/A
ENSDART00000146823 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
Gene Transcript Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSG00000122026 ENST00000272274 N/A N/A 28.168±0.00 88.975±0.00 135.046±0.00 112.676±0.00 47.738±0.71 54.318±23.56 83.698±51.88 91.657±0.00 95.266±0.00 481.038±434.71 502.767±98.24 N/A
ENST00000311549 236.097±0.00 373.720±0.00 N/A 90.493±0.00 197.862±0.00 266.410±0.00 99.638±0.00 139.294±0.00 82.193±0.00 525.742±0.00 202.069±0.00 240.708±64.30 122.704±53.00 109.457±63.93
ENST00000319826 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 9.319±0.00
ENST00000326092 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000461690 62.820±0.00 139.457±0.00 5.299±0.00 51.650±0.00 87.341±0.00 201.292±0.00 N/A 27.118±14.27 14.805±0.00 N/A N/A N/A N/A 112.685±0.00
ENST00000466550 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000473558 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000483765 N/A N/A N/A 41.716±0.00 N/A N/A N/A N/A N/A 38.691±0.00 N/A N/A N/A N/A
ENST00000485756 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000493317 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSG00000152484 ENST00000282344 6.952±0.00 5.268±0.00 4.852±0.00 7.288±1.92 7.606±0.86 13.408±5.43 3.071±0.74 7.941±0.00 7.559±4.39 10.309±0.40 2.467±0.88 4.963±2.37 3.741±0.40 9.055±1.91
ENST00000612674 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000620323 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSG00000230641 ENST00000452222 N/A N/A N/A 0.576±0.00 0.089±0.00 N/A 0.228±0.00 N/A N/A 0.191±0.04 N/A 3.377±0.00 0.316±0.00 3.465±0.00
ENSG00000232162 ENST00000440657 N/A N/A N/A N/A 0.195±0.00 N/A N/A N/A N/A N/A N/A 0.616±0.00 0.415±0.00 N/A
ENSG00000234772 ENST00000444744 0.049±0.00 0.023±0.00 N/A 0.473±0.38 0.871±0.00 0.576±0.00 0.043±0.00 0.110±0.00 N/A N/A N/A 0.192±0.07 N/A 0.101±0.01
ENSG00000275294 ENST00000610335 N/A N/A N/A 0.095±0.00 0.062±0.00 N/A N/A 0.068±0.00 N/A N/A N/A 0.049±0.01 0.078±0.06 0.103±0.00
ENST00000620494 0.157±0.00 N/A N/A 0.431±0.00 0.625±0.00 0.247±0.00 0.149±0.00 0.673±0.00 N/A 0.161±0.00 N/A 0.086±0.00 N/A 1.208±0.93
ENSG00000278496 ENST00000619632 0.093±0.00 N/A N/A N/A N/A N/A N/A 0.078±0.00 0.087±0.00 N/A N/A 0.033±0.00 N/A N/A
Gene Transcript Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUSG00000029640 ENSMUST00000085614 6.658±3.01 3.572±1.13 6.834±0.04 6.139±0.94 3.829±0.69 10.010±1.82 2.891±0.82 8.889±1.83 5.280±1.54 7.591±1.19 4.376±0.40 6.126±1.45 14.196±8.32 15.690±3.60
ENSMUST00000124009 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUST00000138202 N/A 1.603±0.11 N/A N/A 2.372±0.33 1.744±0.00 N/A 5.104±0.00 0.826±0.00 3.544±0.00 N/A 1.424±0.37 N/A N/A
ENSMUSG00000041453 ENSMUST00000035983 27.768±5.43 2.890±0.88 136.742±0.00 N/A 18.606±4.74 18.687±6.58 16.433±3.47 28.497±1.10 29.610±32.38 25.382±1.16 17.143±4.73 14.696±2.18 N/A 32.272±4.44
ENSMUST00000075453 25.674±12.46 4.973±2.01 214.976±27.02 100.612±80.14 22.087±5.90 24.464±5.27 23.588±4.64 34.403±13.41 91.778±97.42 33.281±7.75 169.383±14.48 276.047±403.54 291.635±171.56 37.433±43.06
ENSMUST00000099272 N/A N/A N/A 16.501±0.18 N/A N/A N/A N/A N/A N/A N/A 5.729±0.00 N/A N/A
ENSMUST00000135345 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUST00000151871 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUST00000154768 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A

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