C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Gene Info

Description: cullin 1
Gene AccessionGene NameTax IDStrandPositionGene Biotype
ENSMUSG00000029686 Cul1 10090 + 6:47453398-47526139 protein_coding
  Transcript Accession Transcript Name Position Transcript Biotype
  ENSMUST00000031697 Cul1-001 47454320-47526139 protein_coding
  ENSMUST00000126877 Cul1-009 47514809-47526058 processed_transcript
  ENSMUST00000143941 Cul1-003 47454388-47485177 processed_transcript
  ENSMUST00000146200 Cul1-002 47453904-47523766 protein_coding
  ENSMUST00000146828 Cul1-004 47453398-47497237 protein_coding
  ENSMUST00000149531 Cul1-008 47523564-47525779 processed_transcript
  ENSMUST00000151934 Cul1-010 47516992-47519779 retained_intron
  ENSMUST00000152547 Cul1-005 47453492-47484965 protein_coding
  ENSMUST00000154201 Cul1-007 47519696-47523281 retained_intron
  ENSMUST00000154391 Cul1-006 47453576-47485193 processed_transcript

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENSMUST00000031697ENSMUST00000146200ENSMUST00000146828ENSMUST00000149531
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUST00000031697 14.421±3.51 14.800±1.80 25.363±4.50 24.121±13.26 11.082±3.11 8.279±3.41 9.585±0.49 15.105±2.85 14.236±6.13 15.947±1.92 20.994±0.70 14.786±9.12 40.008±31.45 12.428±3.03
ENSMUST00000146200 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 14.146±3.13 N/A 6.297±0.00
ENSMUST00000146828 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 13.826±0.00 N/A N/A
ENSMUST00000149531 N/A N/A N/A 29.261±0.00 N/A N/A N/A N/A N/A N/A N/A 43.825±0.00 53.461±0.00 N/A

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0004XU CIL_0004XU_0002 CGP 6:47453398-47595341

Gene Ontology
GO IDEvidence TypeGO Description
GO:0004842 IC ubiquitin-protein transferase activity
GO:0005515 IPI protein binding
GO:0006511 IC ubiquitin-dependent protein catabolic process
GO:0006513 IGI protein monoubiquitination
GO:0006915 IMP apoptotic process
GO:0008283 IMP cell proliferation
GO:0009887 IMP organ morphogenesis
GO:0016032 IEA viral process
GO:0016567 IEA protein ubiquitination
GO:0019005 IDA:ISS SCF ubiquitin ligase complex
GO:0031146 IDA SCF-dependent proteasomal ubiquitin-dependent protein catabolic process
GO:0031625 IEA ubiquitin protein ligase binding
GO:1990452 IEA Parkin-FBXW7-Cul1 ubiquitin ligase complex

Homologs

ENSEMBL Accession Gene Name Description Biotype Species
ENSDARG00000007691 cul1b cullin 1b protein_coding Danio_rerio
ENSDARG00000019239 cul1a cullin 1a protein_coding Danio_rerio
ENSG00000055130 CUL1 cullin 1 protein_coding Homo_sapiens

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