C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Gene Info

Description: calumenin
Gene AccessionGene NameTax IDStrandPositionGene Biotype
ENSMUSG00000029767 Calu 10090 + 6:29348069-29377110 protein_coding
  Transcript Accession Transcript Name Position Transcript Biotype
  ENSMUST00000031779 Calu-001 29348106-29376675 protein_coding
  ENSMUST00000090481 Calu-002 29348119-29376129 protein_coding
  ENSMUST00000138523 Calu-004 29373666-29375031 processed_transcript
  ENSMUST00000156163 Calu-003 29361461-29373352 protein_coding
  ENSMUST00000172607 Calu-010 29372553-29377110 protein_coding
  ENSMUST00000172974 Calu-009 29356477-29374503 protein_coding
  ENSMUST00000173216 Calu-007 29348069-29374503 protein_coding
  ENSMUST00000173694 Calu-008 29356477-29374503 protein_coding
  ENSMUST00000174096 Calu-005 29356477-29374503 nonsense_mediated_decay
  ENSMUST00000174280 Calu-006 29361224-29372551 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENSMUST00000031779ENSMUST00000090481ENSMUST00000172974ENSMUST00000173216ENSMUST00000174096
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUST00000031779 43.070±16.41 5.141±1.49 88.158±7.22 25.219±14.66 21.941±12.06 11.010±2.13 33.083±3.98 14.071±1.98 25.390±17.60 35.972±11.25 9.168±3.08 32.553±13.51 89.362±41.88 4.867±0.91
ENSMUST00000090481 N/A N/A 24.559±0.00 7.928±0.00 N/A N/A N/A N/A 8.474±0.14 N/A 10.154±1.10 22.287±1.98 53.545±23.60 2.466±0.80
ENSMUST00000172974 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 140.510±0.00 N/A 25.326±0.00
ENSMUST00000173216 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 190.825±0.00 N/A 54.427±0.00
ENSMUST00000174096 N/A N/A N/A 49.135±0.00 N/A N/A N/A N/A N/A N/A N/A 188.839±0.00 422.153±76.16 38.008±0.00

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0004FD CIL_0004FD_0002 CGP 6:29319140-29377110
CIL_0005UE CIL_0005UE_0003 CGP 6:29348069-29388468

Gene Ontology
GO IDEvidence TypeGO Description
GO:0005509 IDA calcium ion binding
GO:0005515 IEA protein binding
GO:0005576 TAS extracellular region
GO:0005783 IDA endoplasmic reticulum
GO:0005788 TAS endoplasmic reticulum lumen
GO:0016020 IEA membrane
GO:0016529 IEA sarcoplasmic reticulum

Homologs

ENSEMBL Accession Gene Name Description Biotype Species
ENSDARG00000045676 calua calumenin a protein_coding Danio_rerio
ENSG00000128595 CALU calumenin protein_coding Homo_sapiens

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