C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Gene Info

Description: interferon regulatory factor 5
Gene AccessionGene NameTax IDStrandPositionGene Biotype
ENSMUSG00000029771 Irf5 10090 + 6:29526625-29541869 protein_coding
  Transcript Accession Transcript Name Position Transcript Biotype
  ENSMUST00000004392 Irf5-001 29526625-29537319 protein_coding
  ENSMUST00000163511 Irf5-003 29529282-29537319 protein_coding
  ENSMUST00000164626 Irf5-002 29528270-29533997 protein_coding
  ENSMUST00000164922 Irf5-006 29531248-29535346 processed_transcript
  ENSMUST00000167252 Irf5-004 29535890-29541869 protein_coding
  ENSMUST00000171527 Irf5-005 29541146-29541858 processed_transcript

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBreastColonHeartKidneyLiverLungOvaryENSMUST00000004392ENSMUST00000163511
Transcript ID Adipose Adrenal Bladder Breast Colon Heart Kidney Liver Lung Ovary
ENSMUST00000004392 9.645±1.01 4.710±1.64 11.742±1.48 16.431±3.68 3.438±0.44 2.847±0.11 7.772±0.97 11.354±3.99 12.846±1.18 6.466±1.71
ENSMUST00000163511 N/A 3.392±0.89 N/A 8.345±0.00 4.087±0.80 N/A N/A 6.977±3.18 5.339±0.11 5.498±1.78

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0001YB CIL_0001YB_0002 CGP 6:29526625-29609887

Gene Ontology
GO IDEvidence TypeGO Description
GO:0000975 IEA regulatory region DNA binding
GO:0003700 IEA sequence-specific DNA binding transcription factor activity
GO:0005515 IPI protein binding
GO:0005634 IEA nucleus
GO:0005737 IEA cytoplasm
GO:0006351 IEA transcription, DNA-templated
GO:0032494 IEA response to peptidoglycan
GO:0032495 IEA response to muramyl dipeptide
GO:0043065 IEA positive regulation of apoptotic process
GO:0045087 IEA innate immune response
GO:0045944 IEA positive regulation of transcription from RNA polymerase II promoter
GO:0051607 IMP defense response to virus

Homologs

ENSEMBL Accession Gene Name Description Biotype Species
ENSDARG00000045681 irf5 interferon regulatory factor 5 protein_coding Danio_rerio
ENSG00000128604 IRF5 interferon regulatory factor 5 protein_coding Homo_sapiens

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