C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: interferon regulatory factor 5
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000163511 Irf5-003 ENSMUSG00000029771 10090 + 6:29529282-29537319 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdrenalBreastColonLiverLungOvaryENSMUST00000163511
Transcript ID Adrenal Breast Colon Liver Lung Ovary
ENSMUST00000163511 3.392±0.89 8.345±0.00 4.087±0.80 6.977±3.18 5.339±0.11 5.498±1.78

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0001YB CIL_0001YB_0002 CGP 6:29526625-29609887

Gene Ontology

GO IDEvidence TypeGO Description
GO:0000975 IEA regulatory region DNA binding
GO:0003700 IEA sequence-specific DNA binding transcription factor activity
GO:0005515 IPI protein binding
GO:0005634 IEA nucleus
GO:0005737 IEA cytoplasm
GO:0006351 IEA transcription, DNA-templated
GO:0032494 IEA response to peptidoglycan
GO:0032495 IEA response to muramyl dipeptide
GO:0043065 IEA positive regulation of apoptotic process
GO:0045087 IEA innate immune response
GO:0045944 IEA positive regulation of transcription from RNA polymerase II promoter
GO:0051607 IMP defense response to virus

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENST00000249375 IRF5-201 protein_coding Homo_sapiens 0 1555
ENST00000357234 IRF5-002 protein_coding Homo_sapiens 0 1081
ENST00000402030 IRF5-001 protein_coding Homo_sapiens 0 1555
ENST00000461416 IRF5-006 retained_intron Homo_sapiens 0 542
ENST00000464557 IRF5-010 protein_coding Homo_sapiens 0 374
ENST00000465603 IRF5-007 nonsense_mediated_decay Homo_sapiens 0 1375
ENST00000467002 IRF5-011 protein_coding Homo_sapiens 0 215
ENST00000473745 IRF5-009 protein_coding Homo_sapiens 0 1555
ENST00000473787 IRF5-012 nonsense_mediated_decay Homo_sapiens 0 267
ENST00000477535 IRF5-005 protein_coding Homo_sapiens 0 907
ENST00000479582 IRF5-008 protein_coding Homo_sapiens 0 483
ENST00000488569 IRF5-004 retained_intron Homo_sapiens 0 427
ENST00000489702 IRF5-003 protein_coding Homo_sapiens 0 512
ENST00000613821 IRF5-202 protein_coding Homo_sapiens 0 512
ENST00000619830 IRF5-203 protein_coding Homo_sapiens 0 1088

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