C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Region Summary
CIL_0001YB_0001 (Click to Hide/Show)
Source ID Type Tax ID Position
ENSG00000128604-ENSG00000064419 CGP 9606 7:128937612-129055144
GeneTranscriptPositionBiotype
ENSG00000064419 (TNPO3)
transportin 3 		ENST00000265388 (TNPO3-001) 128954180-129054914 protein_coding
ENST00000471166 (TNPO3-005) 128957223-129054883 protein_coding
ENST00000471234 (TNPO3-003) 128955088-129055144 protein_coding
ENST00000482320 (TNPO3-002) 128955088-129055093 protein_coding
ENSG00000128604 (IRF5)
interferon regulatory factor 5 		ENST00000249375 (IRF5-201) 128938217-128950030 protein_coding
ENST00000357234 (IRF5-002) 128937940-128948832 protein_coding
ENST00000402030 (IRF5-001) 128937989-128950035 protein_coding
ENST00000461416 (IRF5-006) 128937981-128947745 retained_intron
ENST00000464557 (IRF5-010) 128937972-128945967 protein_coding
ENST00000465603 (IRF5-007) 128940838-128949388 nonsense_mediated_decay
ENST00000467002 (IRF5-011) 128940206-128942259 protein_coding
ENST00000473745 (IRF5-009) 128940672-128949388 protein_coding
ENST00000473787 (IRF5-012) 128937991-128946556 nonsense_mediated_decay
ENST00000477535 (IRF5-005) 128937940-128948832 protein_coding
ENST00000479582 (IRF5-008) 128937962-128946540 protein_coding
ENST00000488569 (IRF5-004) 128937937-128946942 retained_intron
ENST00000489702 (IRF5-003) 128937612-128946570 protein_coding
ENST00000613821 (IRF5-202) 128937940-128947256 protein_coding
ENST00000619830 (IRF5-203) 128940838-128948982 protein_coding
ENSG00000242241 (RN7SL306P)
RNA, 7SL, cytoplasmic 306, pseudogene 		ENST00000492941 (RN7SL306P-201) 128970734-128971029 misc_RNA
ENSG00000244556 (ODCP)
ornithine decarboxylase pseudogene 		ENST00000459650 (ODCP-001) 129028889-129030527 processed_pseudogene
ENSG00000275106 (RP11-309L24.10)
 ENST00000613068 (RP11-309L24.10-001) 128952527-128953316 lincRNA
CIL_0001YB_0002 (Click to Hide/Show)
Source ID Type Tax ID Position
ENSMUSG00000029771-ENSMUSG00000012535 CGP 10090 6:29526625-29609887
GeneTranscriptPositionBiotype
ENSMUSG00000012535 (Tnpo3)
transportin 3 		ENSMUST00000012679 (Tnpo3-001) 29540827-29609887 protein_coding
ENSMUST00000115251 (Tnpo3-201) 29540827-29609607 protein_coding
ENSMUST00000164325 (Tnpo3-008) 29583343-29609634 retained_intron
ENSMUST00000166844 (Tnpo3-003) 29589088-29609613 nonsense_mediated_decay
ENSMUST00000167056 (Tnpo3-004) 29578552-29582386 retained_intron
ENSMUST00000169302 (Tnpo3-007) 29564877-29609623 retained_intron
ENSMUST00000170350 (Tnpo3-002) 29541571-29609811 nonsense_mediated_decay
ENSMUST00000170634 (Tnpo3-009) 29580053-29609819 retained_intron
ENSMUST00000170647 (Tnpo3-005) 29540982-29560094 protein_coding
ENSMUST00000171865 (Tnpo3-006) 29554883-29557065 retained_intron
ENSMUSG00000029771 (Irf5)
interferon regulatory factor 5 		ENSMUST00000004392 (Irf5-001) 29526625-29537319 protein_coding
ENSMUST00000163511 (Irf5-003) 29529282-29537319 protein_coding
ENSMUST00000164626 (Irf5-002) 29528270-29533997 protein_coding
ENSMUST00000164922 (Irf5-006) 29531248-29535346 processed_transcript
ENSMUST00000167252 (Irf5-004) 29535890-29541869 protein_coding
ENSMUST00000171527 (Irf5-005) 29541146-29541858 processed_transcript

Expression Patterns

Heat Map
Heat Map (Expressed Only)
Numeric Values
Region; Gene Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisCIL_0001YB_0001ENSG00000064419ENST00000265388ENST00000471166ENST00000471234ENST00000482320ENSG00000128604ENST00000249375ENST00000357234ENST00000402030ENST00000461416ENST00000464557ENST00000465603ENST00000467002ENST00000473745ENST00000473787ENST00000477535ENST00000479582ENST00000488569ENST00000489702ENST00000613821ENST00000619830ENSG00000242241ENST00000492941ENSG00000244556ENST00000459650ENSG00000275106ENST00000613068CIL_0001YB_0002ENSMUSG00000012535ENSMUST00000012679ENSMUST00000115251ENSMUST00000164325ENSMUST00000166844ENSMUST00000167056ENSMUST00000169302ENSMUST00000170350ENSMUST00000170634ENSMUST00000170647ENSMUST00000171865ENSMUSG00000029771ENSMUST00000004392ENSMUST00000163511ENSMUST00000164626ENSMUST00000164922ENSMUST00000167252ENSMUST00000171527
Region; Gene Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisCIL_0001YB_0001ENSG00000064419ENST00000265388ENST00000471166ENST00000471234ENSG00000128604ENST00000249375ENST00000357234ENST00000402030ENST00000461416ENST00000465603ENST00000473745ENST00000473787ENST00000477535ENST00000488569ENST00000613821ENST00000619830ENSG00000242241ENST00000492941ENSG00000244556ENST00000459650ENSG00000275106ENST00000613068CIL_0001YB_0002ENSMUSG00000012535ENSMUST00000012679ENSMUST00000115251ENSMUST00000166844ENSMUST00000170350ENSMUST00000170647ENSMUSG00000029771ENSMUST00000004392ENSMUST00000163511
Gene Transcript Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSG00000064419 ENST00000265388 10.270±0.00 8.768±0.00 N/A 4.354±3.49 9.092±0.00 5.528±4.77 4.755±3.26 7.572±5.29 5.598±0.40 3.770±0.70 9.655±7.85 9.167±4.01 6.620±0.22 14.525±2.46
ENST00000471166 N/A N/A N/A 1.606±0.00 2.063±0.00 N/A 1.221±0.00 N/A N/A N/A 2.484±0.00 4.543±0.00 2.830±0.00 N/A
ENST00000471234 N/A N/A 2.095±0.00 N/A 3.621±0.00 N/A N/A N/A N/A 1.059±0.00 N/A 8.502±0.00 3.977±0.00 18.528±0.00
ENST00000482320 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSG00000128604 ENST00000249375 N/A N/A N/A 0.096±0.00 N/A 0.304±0.00 N/A N/A 0.069±0.00 N/A N/A 1.004±0.00 1.629±0.00 0.254±0.03
ENST00000357234 N/A N/A 0.613±0.00 N/A N/A N/A 0.160±0.00 N/A 0.577±0.00 1.078±0.00 N/A N/A N/A N/A
ENST00000402030 0.493±0.00 N/A N/A N/A 0.431±0.00 N/A 0.227±0.00 N/A N/A N/A N/A 1.077±0.00 N/A N/A
ENST00000461416 N/A N/A N/A 0.109±0.00 0.861±0.00 0.205±0.00 N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000464557 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000465603 N/A 4.683±0.00 N/A 0.423±0.14 1.292±0.00 N/A N/A 9.090±0.00 0.384±0.00 3.055±0.00 N/A 0.696±0.55 0.800±0.14 1.710±0.00
ENST00000467002 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000473745 0.483±0.00 1.830±0.00 N/A N/A N/A 0.097±0.00 0.816±0.00 N/A N/A N/A N/A 0.924±0.00 1.796±0.58 N/A
ENST00000473787 N/A N/A 1.348±0.00 N/A N/A N/A N/A N/A N/A N/A 0.206±0.00 N/A N/A N/A
ENST00000477535 N/A N/A N/A N/A N/A N/A N/A N/A N/A 0.637±0.00 N/A N/A N/A N/A
ENST00000479582 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000488569 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 0.239±0.00
ENST00000489702 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000613821 N/A N/A N/A N/A N/A N/A 0.472±0.00 N/A N/A N/A N/A N/A N/A N/A
ENST00000619830 N/A N/A N/A 0.214±0.00 N/A 0.238±0.00 0.049±0.00 N/A N/A N/A N/A 0.834±0.00 N/A N/A
ENSG00000242241 ENST00000492941 N/A N/A N/A 0.214±0.00 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSG00000244556 ENST00000459650 0.022±0.00 N/A 0.516±0.00 0.049±0.00 1.149±0.00 0.844±0.00 0.048±0.00 0.090±0.00 0.074±0.05 N/A 0.301±0.00 0.252±0.37 N/A N/A
ENSG00000275106 ENST00000613068 0.029±0.00 0.426±0.00 0.095±0.00 0.365±0.00 0.137±0.00 0.090±0.00 0.134±0.00 N/A N/A 0.061±0.00 N/A 0.264±0.20 0.052±0.01 0.078±0.04
Gene Transcript Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUSG00000012535 ENSMUST00000012679 12.347±2.11 3.201±0.00 21.090±1.80 11.661±4.42 10.461±2.45 10.158±0.61 7.790±2.01 11.699±2.03 11.756±6.45 10.860±1.08 10.178±2.54 7.578±2.74 14.147±6.78 9.772±3.43
ENSMUST00000115251 N/A 5.918±0.97 N/A N/A N/A N/A N/A N/A N/A N/A N/A 8.865±3.15 N/A N/A
ENSMUST00000164325 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUST00000166844 N/A 34.790±8.01 N/A N/A N/A 20.250±0.00 N/A N/A N/A N/A N/A 32.599±5.53 N/A N/A
ENSMUST00000167056 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUST00000169302 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUST00000170350 5.380±1.53 4.780±1.41 N/A 6.566±2.11 6.690±2.69 3.824±0.90 4.000±1.35 3.756±0.00 N/A 5.915±0.75 3.400±0.09 7.818±2.72 9.864±4.41 2.403±0.63
ENSMUST00000170634 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUST00000170647 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 5.917±0.00 N/A
ENSMUST00000171865 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUSG00000029771 ENSMUST00000004392 9.645±1.01 4.710±1.64 11.742±1.48 N/A 16.431±3.68 3.438±0.44 2.847±0.11 7.772±0.97 11.354±3.99 12.846±1.18 N/A 6.466±1.71 N/A N/A
ENSMUST00000163511 N/A 3.392±0.89 N/A N/A 8.345±0.00 4.087±0.80 N/A N/A 6.977±3.18 5.339±0.11 N/A 5.498±1.78 N/A N/A
ENSMUST00000164626 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUST00000164922 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUST00000167252 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUST00000171527 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A

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