C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: RAB43, member RAS oncogene family
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000078647 Rab43-001 ENSMUSG00000030055 10090 - 6:87788853-87811779 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENSMUST00000078647
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUST00000078647 17.147±8.11 14.606±1.08 8.567±1.18 1.562±0.41 21.576±4.66 34.148±5.13 3.268±0.93 17.267±1.16 32.164±18.29 16.673±2.91 0.701±0.18 22.198±6.35 5.224±2.03 4.353±2.00

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0003B6 CIL_0003B6_0002 CGP 6:87778136-87812164
CIL_000311 CIL_000311_0002 CGP 6:87788853-87838759

Gene Ontology

GO IDEvidence TypeGO Description
GO:0003924 ISS GTPase activity
GO:0005515 IEA protein binding
GO:0005525 IEA GTP binding
GO:0005794 ISS Golgi apparatus
GO:0007030 ISS Golgi organization
GO:0007264 IEA small GTPase mediated signal transduction
GO:0015031 IEA protein transport
GO:0016020 IEA membrane
GO:0019068 IEA virion assembly
GO:0035526 ISS retrograde transport, plasma membrane to Golgi
GO:0045335 ISS phagocytic vesicle
GO:0070062 IEA extracellular vesicular exosome
GO:0090382 ISS phagosome maturation

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENST00000315150 RAB43-001 protein_coding Homo_sapiens 0 806
ENST00000393304 RAB43-002 protein_coding Homo_sapiens 0 806
ENST00000393305 RAB43-004 protein_coding Homo_sapiens 0 806
ENST00000393307 RAB43-005 protein_coding Homo_sapiens 0 806
ENST00000393308 RAB43-003 protein_coding Homo_sapiens 0 806
ENST00000418265 ISY1-RAB43-001 protein_coding Homo_sapiens 0 525
ENST00000457077 RAB43-006 protein_coding Homo_sapiens 0 355
ENST00000476465 RAB43-007 protein_coding Homo_sapiens 0 529
ENST00000561790 RAB43P1-001 processed_pseudogene Homo_sapiens 0 743
ENST00000615093 RAB43-201 protein_coding Homo_sapiens 0 529

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