C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Gene Info

Description: TATA element modulatory factor 1
Gene AccessionGene NameTax IDStrandPositionGene Biotype
ENSMUSG00000030059 Tmf1 10090 - 6:97155266-97179124 protein_coding
  Transcript Accession Transcript Name Position Transcript Biotype
  ENSMUST00000095664 Tmf1-001 97155266-97179124 protein_coding
  ENSMUST00000124173 Tmf1-002 97155266-97179037 nonsense_mediated_decay

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENSMUST00000095664ENSMUST00000124173
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUST00000095664 2.029±1.35 2.360±0.24 2.895±0.85 7.625±3.90 2.216±0.48 4.096±1.01 1.686±0.54 2.744±0.46 1.430±0.41 3.367±0.42 3.792±0.39 4.242±2.95 9.657±3.35 30.417±6.64
ENSMUST00000124173 N/A N/A N/A 8.071±0.00 N/A N/A N/A N/A N/A N/A N/A N/A 13.508±4.59 61.846±0.00

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0001TE CIL_0001TE_0003 CGP 6:97110024-97179124
CIL_0001TD CIL_0001TD_0003 CGP 6:97155266-97205642

Gene Ontology
GO IDEvidence TypeGO Description
GO:0001675 IMP acrosome assembly
GO:0001819 IMP positive regulation of cytokine production
GO:0003677 IEA DNA binding
GO:0005515 IPI protein binding
GO:0005634 IEA nucleus
GO:0005783 IDA endoplasmic reticulum
GO:0005794 IDA Golgi apparatus
GO:0006351 IEA transcription, DNA-templated
GO:0006355 IEA regulation of transcription, DNA-templated
GO:0007286 IMP spermatid development
GO:0007289 IMP spermatid nucleus differentiation
GO:0008584 IMP male gonad development
GO:0010629 IMP negative regulation of gene expression
GO:0016020 IEA membrane
GO:0030317 IMP sperm motility
GO:0032275 IMP luteinizing hormone secretion
GO:0033327 IMP Leydig cell differentiation
GO:0042742 IMP defense response to bacterium
GO:0043066 IMP negative regulation of apoptotic process
GO:0061136 IDA regulation of proteasomal protein catabolic process
GO:0071407 IMP cellular response to organic cyclic compound
GO:2000845 IMP positive regulation of testosterone secretion

Homologs

ENSEMBL Accession Gene Name Description Biotype Species
ENSDARG00000057997 tmf1 TATA element modulatory factor 1 protein_coding Danio_rerio
ENSG00000144747 TMF1 TATA element modulatory factor 1 protein_coding Homo_sapiens

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