C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: TATA element modulatory factor 1
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000095664 Tmf1-001 ENSMUSG00000030059 10090 - 6:97155266-97179124 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENSMUST00000095664
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUST00000095664 2.029±1.35 2.360±0.24 2.895±0.85 7.625±3.90 2.216±0.48 4.096±1.01 1.686±0.54 2.744±0.46 1.430±0.41 3.367±0.42 3.792±0.39 4.242±2.95 9.657±3.35 30.417±6.64

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0001TE CIL_0001TE_0003 CGP 6:97110024-97179124
CIL_0001TD CIL_0001TD_0003 CGP 6:97155266-97205642

Gene Ontology

GO IDEvidence TypeGO Description
GO:0001675 IMP acrosome assembly
GO:0001819 IMP positive regulation of cytokine production
GO:0003677 IEA DNA binding
GO:0005515 IPI protein binding
GO:0005634 IEA nucleus
GO:0005783 IDA endoplasmic reticulum
GO:0005794 IDA Golgi apparatus
GO:0006351 IEA transcription, DNA-templated
GO:0006355 IEA regulation of transcription, DNA-templated
GO:0007286 IMP spermatid development
GO:0007289 IMP spermatid nucleus differentiation
GO:0008584 IMP male gonad development
GO:0010629 IMP negative regulation of gene expression
GO:0016020 IEA membrane
GO:0030317 IMP sperm motility
GO:0032275 IMP luteinizing hormone secretion
GO:0033327 IMP Leydig cell differentiation
GO:0042742 IMP defense response to bacterium
GO:0043066 IMP negative regulation of apoptotic process
GO:0061136 IDA regulation of proteasomal protein catabolic process
GO:0071407 IMP cellular response to organic cyclic compound
GO:2000845 IMP positive regulation of testosterone secretion

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENST00000398559 TMF1-001 protein_coding Homo_sapiens 0 3546
ENST00000488010 TMF1-002 nonsense_mediated_decay Homo_sapiens 0 2254
ENST00000543976 TMF1-201 protein_coding Homo_sapiens 0 3437
ENST00000576058 AC003009.2-001 processed_pseudogene Homo_sapiens 0 396

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