C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Gene Info

Description: TATA element modulatory factor 1
Gene AccessionGene NameTax IDStrandPositionGene Biotype
ENSG00000144747 TMF1 9606 - 3:69019827-69052303 protein_coding
  Transcript Accession Transcript Name Position Transcript Biotype
  ENST00000398559 TMF1-001 69019827-69052303 protein_coding
  ENST00000477872 TMF1-004 69043792-69044628 retained_intron
  ENST00000488010 TMF1-002 69023077-69052290 nonsense_mediated_decay
  ENST00000489370 TMF1-005 69024282-69026100 processed_transcript
  ENST00000543976 TMF1-201 69023177-69052086 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENST00000398559ENST00000488010ENST00000543976
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENST00000398559 4.041±0.00 4.851±0.00 1.188±0.00 2.149±0.11 2.842±0.70 2.711±0.31 1.745±0.84 5.470±0.00 2.164±0.51 3.703±0.77 3.813±0.00 2.584±0.63 2.495±0.53 4.238±0.00
ENST00000488010 N/A N/A 3.865±0.00 N/A N/A 5.770±0.00 N/A 3.505±0.00 N/A 3.295±0.00 N/A 2.616±0.00 N/A 8.094±0.00
ENST00000543976 N/A N/A N/A 4.091±0.00 3.437±0.00 5.251±0.00 1.730±0.00 N/A 3.508±0.00 5.442±0.00 3.709±2.86 4.751±0.44 10.377±0.00 37.903±25.94

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0001TE CIL_0001TE_0002 CGP 3:68975214-69052303
CIL_0001TD CIL_0001TD_0002 CGP 3:69019827-69080408

Gene Ontology
GO IDEvidence TypeGO Description
GO:0001675 IEA acrosome assembly
GO:0001819 IEA positive regulation of cytokine production
GO:0003677 IEA DNA binding
GO:0003712 TAS transcription cofactor activity
GO:0005515 IPI protein binding
GO:0005634 IEA nucleus
GO:0005783 IEA endoplasmic reticulum
GO:0005794 IDA Golgi apparatus
GO:0006355 IEA regulation of transcription, DNA-templated
GO:0006366 TAS transcription from RNA polymerase II promoter
GO:0007286 IEA spermatid development
GO:0007289 IEA spermatid nucleus differentiation
GO:0008584 IEA male gonad development
GO:0010629 IEA negative regulation of gene expression
GO:0016020 IEA membrane
GO:0030317 IEA sperm motility
GO:0032275 IEA luteinizing hormone secretion
GO:0033327 IEA Leydig cell differentiation
GO:0042742 IEA defense response to bacterium
GO:0043066 IEA negative regulation of apoptotic process
GO:0061136 ISS regulation of proteasomal protein catabolic process
GO:0071407 IEA cellular response to organic cyclic compound
GO:2000845 IEA positive regulation of testosterone secretion

Homologs

ENSEMBL Accession Gene Name Description Biotype Species
ENSDARG00000057997 tmf1 TATA element modulatory factor 1 protein_coding Danio_rerio
ENSMUSG00000030059 Tmf1 TATA element modulatory factor 1 protein_coding Mus_musculus

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