C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Gene Info

Description: FERM domain containing 4B
Gene AccessionGene NameTax IDStrandPositionGene Biotype
ENSMUSG00000030064 Frmd4b 10090 - 6:97286867-97617541 protein_coding
  Transcript Accession Transcript Name Position Transcript Biotype
  ENSMUST00000032146 Frmd4b-003 97288360-97487805 protein_coding
  ENSMUST00000113353 Frmd4b-004 97324316-97487803 protein_coding
  ENSMUST00000113355 Frmd4b-001 97286867-97617541 protein_coding
  ENSMUST00000113359 Frmd4b-005 97287088-97459286 protein_coding
  ENSMUST00000124050 Frmd4b-009 97396257-97431429 processed_transcript
  ENSMUST00000126899 Frmd4b-006 97395789-97396704 retained_intron
  ENSMUST00000135077 Frmd4b-013 97307828-97308685 processed_transcript
  ENSMUST00000138301 Frmd4b-011 97308710-97354177 processed_transcript
  ENSMUST00000142589 Frmd4b-002 97350933-97617529 retained_intron
  ENSMUST00000143698 Frmd4b-007 97287082-97312380 processed_transcript
  ENSMUST00000146191 Frmd4b-008 97307213-97312430 retained_intron
  ENSMUST00000152385 Frmd4b-010 97323658-97396736 processed_transcript
  ENSMUST00000155326 Frmd4b-012 97308137-97324140 processed_transcript

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENSMUST00000032146ENSMUST00000113355ENSMUST00000113359ENSMUST00000143698
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUST00000032146 3.742±2.32 2.919±0.31 N/A N/A 3.359±0.77 3.375±0.73 1.094±0.17 4.620±0.69 1.208±0.28 4.123±1.23 0.316±0.00 4.792±1.18 N/A 1.413±0.12
ENSMUST00000113355 2.956±1.66 0.651±0.20 1.993±0.17 4.186±2.57 0.890±0.12 N/A N/A 1.033±0.00 1.159±0.06 4.235±0.73 0.246±0.01 1.407±0.58 3.221±1.39 N/A
ENSMUST00000113359 N/A 0.659±0.17 N/A 0.951±0.00 N/A N/A 0.561±0.03 2.500±0.00 1.057±0.49 2.614±0.00 0.409±0.17 2.709±0.93 2.242±0.61 0.843±0.27
ENSMUST00000143698 N/A 0.620±0.00 3.433±0.35 N/A 2.999±2.05 1.611±0.18 0.431±0.00 1.444±0.00 1.927±0.53 2.725±0.00 0.237±0.04 2.305±0.67 N/A N/A

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0003AY CIL_0003AY_0002 CGP 6:97238528-97617541
CIL_0001TC CIL_0001TC_0003 CGP 6:97286867-98021349

Gene Ontology
GO IDEvidence TypeGO Description
GO:0001726 IPI ruffle
GO:0005515 IPI protein binding
GO:0005615 IEA extracellular space
GO:0005737 IDA cytoplasm
GO:0005856 IEA cytoskeleton
GO:0090162 IGI establishment of epithelial cell polarity

Homologs

ENSEMBL Accession Gene Name Description Biotype Species
ENSDARG00000074599 frmd4ba FERM domain containing 4Ba protein_coding Danio_rerio
ENSDARG00000076496 frmd4bb FERM domain containing 4Bb protein_coding Danio_rerio
ENSG00000114541 FRMD4B FERM domain containing 4B protein_coding Homo_sapiens

Loading