C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: FERM domain containing 4B
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000113355 Frmd4b-001 ENSMUSG00000030064 10090 - 6:97286867-97617541 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastKidneyLiverLungMuscleOvaryPlacentaENSMUST00000113355
Transcript ID Adipose Adrenal Bladder Brain Breast Kidney Liver Lung Muscle Ovary Placenta
ENSMUST00000113355 2.956±1.66 0.651±0.20 1.993±0.17 4.186±2.57 0.890±0.12 1.033±0.00 1.159±0.06 4.235±0.73 0.246±0.01 1.407±0.58 3.221±1.39

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0003AY CIL_0003AY_0002 CGP 6:97238528-97617541
CIL_0001TC CIL_0001TC_0003 CGP 6:97286867-98021349

Gene Ontology

GO IDEvidence TypeGO Description
GO:0001726 IPI ruffle
GO:0005515 IPI protein binding
GO:0005615 IEA extracellular space
GO:0005737 IDA cytoplasm
GO:0005856 IEA cytoskeleton
GO:0090162 IGI establishment of epithelial cell polarity

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENST00000398540 FRMD4B-001 protein_coding Homo_sapiens 0 3404
ENST00000459638 FRMD4B-007 protein_coding Homo_sapiens 0 459
ENST00000460709 FRMD4B-011 protein_coding Homo_sapiens 0 468
ENST00000462308 FRMD4B-012 processed_transcript Homo_sapiens 0 215
ENST00000470070 FRMD4B-003 retained_intron Homo_sapiens 0 896
ENST00000473029 FRMD4B-013 protein_coding Homo_sapiens 0 556
ENST00000473188 FRMD4B-002 retained_intron Homo_sapiens 0 383
ENST00000478263 FRMD4B-005 protein_coding Homo_sapiens 0 2590
ENST00000483668 FRMD4B-016 retained_intron Homo_sapiens 0 520
ENST00000487751 FRMD4B-015 retained_intron Homo_sapiens 0 414
ENST00000493880 FRMD4B-014 protein_coding Homo_sapiens 0 553
ENST00000497880 FRMD4B-006 protein_coding Homo_sapiens 0 217

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