C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Region Summary
CIL_0001TC_0001 (Click to Hide/Show)
Source ID Type Tax ID Position
ENSDARG00000074599-ENSDARG00000003732 CGP 7955 6:43182265-43364577
GeneTranscriptPositionBiotype
ENSDARG00000003732 (mitfa)
microphthalmia-associated transcription factor a 		ENSDART00000056457 (mitfa-001) 43357899-43364577 protein_coding
ENSDART00000122793 (mitfa-003) 43321687-43359037 protein_coding
ENSDART00000143374 (mitfa-002) 43331359-43364577 protein_coding
ENSDARG00000074599 (frmd4ba)
FERM domain containing 4Ba 		ENSDART00000061947 (frmd4ba-201) 43183370-43230269 protein_coding
ENSDART00000154170 (frmd4ba-002) 43199809-43226061 retained_intron
ENSDART00000154434 (frmd4ba-001) 43182265-43319220 protein_coding
ENSDART00000155080 (frmd4ba-004) 43189145-43191624 processed_transcript
ENSDART00000155601 (frmd4ba-005) 43196292-43197306 retained_intron
ENSDART00000156267 (frmd4ba-003) 43182848-43193700 protein_coding
ENSDARG00000096903 (si:ch211-170n20.4)
si:ch211-170n20.4 		ENSDART00000155202 (si:ch211-170n20.4-001) 43273479-43278772 antisense
ENSDARG00000097469 (si:ch211-170n20.5)
si:ch211-170n20.5 		ENSDART00000157386 (si:ch211-170n20.5-001) 43278229-43280386 sense_intronic
CIL_0001TC_0002 (Click to Hide/Show)
Source ID Type Tax ID Position
ENSG00000114541-ENSG00000187098 CGP 9606 3:69169990-69968337
GeneTranscriptPositionBiotype
ENSG00000114541 (FRMD4B)
FERM domain containing 4B 		ENST00000398540 (FRMD4B-001) 69169990-69386073 protein_coding
ENST00000459638 (FRMD4B-007) 69287751-69542583 protein_coding
ENST00000460709 (FRMD4B-011) 69224683-69353697 protein_coding
ENST00000462308 (FRMD4B-012) 69306407-69320982 processed_transcript
ENST00000462512 (FRMD4B-017) 69195249-69200898 protein_coding
ENST00000462888 (FRMD4B-009) 69376807-69386088 processed_transcript
ENST00000470070 (FRMD4B-003) 69197715-69320944 retained_intron
ENST00000473029 (FRMD4B-013) 69224607-69320954 protein_coding
ENST00000473188 (FRMD4B-002) 69287645-69386304 retained_intron
ENST00000478263 (FRMD4B-005) 69170807-69200848 protein_coding
ENST00000483668 (FRMD4B-016) 69198697-69250212 retained_intron
ENST00000487751 (FRMD4B-015) 69198726-69250248 retained_intron
ENST00000489817 (FRMD4B-019) 69196896-69199270 protein_coding
ENST00000493127 (FRMD4B-010) 69334172-69385927 processed_transcript
ENST00000493880 (FRMD4B-014) 69216263-69293061 protein_coding
ENST00000497475 (FRMD4B-018) 69196719-69200521 retained_intron
ENST00000497757 (FRMD4B-008) 69333961-69433129 processed_transcript
ENST00000497880 (FRMD4B-006) 69310438-69541340 protein_coding
ENSG00000187098 (MITF)
microphthalmia-associated transcription factor 		ENST00000314557 (MITF-005) 69936587-69965668 protein_coding
ENST00000314589 (MITF-015) 69866212-69965647 protein_coding
ENST00000328528 (MITF-201) 69763811-69968337 protein_coding
ENST00000352241 (MITF-001) 69739435-69968336 protein_coding
ENST00000394348 (MITF-006) 69936629-69939065 protein_coding
ENST00000394351 (MITF-004) 69936603-69965824 protein_coding
ENST00000429090 (MITF-012) 69758704-69937835 protein_coding
ENST00000433517 (MITF-009) 69762724-69949083 protein_coding
ENST00000448226 (MITF-007) 69739471-69966029 protein_coding
ENST00000451708 (MITF-003) 69866259-69959373 protein_coding
ENST00000457080 (MITF-002) 69763811-69879383 protein_coding
ENST00000461014 (MITF-013) 69936829-69941331 processed_transcript
ENST00000461511 (MITF-011) 69739474-69752385 processed_transcript
ENST00000472437 (MITF-014) 69763556-69965647 protein_coding
ENST00000478490 (MITF-008) 69936628-69965570 nonsense_mediated_decay
ENST00000495741 (MITF-010) 69739482-69879347 processed_transcript
ENST00000531774 (MITF-016) 69936723-69965248 protein_coding
ENSG00000239263 (RBM43P1)
RNA binding motif protein 43 pseudogene 1 		ENST00000476891 (RBM43P1-001) 69471452-69472532 processed_pseudogene
ENSG00000240265 (RP11-62G11.1)
 ENST00000498809 (RP11-62G11.1-001) 69535664-69536693 processed_pseudogene
ENSG00000240842 (RP11-62G11.2)
 ENST00000465347 (RP11-62G11.2-001) 69564106-69571122 lincRNA
ENSG00000241665 (RN7SL418P)
RNA, 7SL, cytoplasmic 418, pseudogene 		ENST00000473031 (RN7SL418P-201) 69769487-69769773 misc_RNA
ENSG00000241667 (RP11-444P10.1)
 ENST00000460597 (RP11-444P10.1-001) 69591341-69593121 lincRNA
CIL_0001TC_0003 (Click to Hide/Show)
Source ID Type Tax ID Position
ENSMUSG00000030064-ENSMUSG00000035158 CGP 10090 6:97286867-98021349
GeneTranscriptPositionBiotype
ENSMUSG00000030064 (Frmd4b)
FERM domain containing 4B 		ENSMUST00000032146 (Frmd4b-003) 97288360-97487805 protein_coding
ENSMUST00000113353 (Frmd4b-004) 97324316-97487803 protein_coding
ENSMUST00000113355 (Frmd4b-001) 97286867-97617541 protein_coding
ENSMUST00000113359 (Frmd4b-005) 97287088-97459286 protein_coding
ENSMUST00000124050 (Frmd4b-009) 97396257-97431429 processed_transcript
ENSMUST00000126899 (Frmd4b-006) 97395789-97396704 retained_intron
ENSMUST00000135077 (Frmd4b-013) 97307828-97308685 processed_transcript
ENSMUST00000138301 (Frmd4b-011) 97308710-97354177 processed_transcript
ENSMUST00000142589 (Frmd4b-002) 97350933-97617529 retained_intron
ENSMUST00000143698 (Frmd4b-007) 97287082-97312380 processed_transcript
ENSMUST00000146191 (Frmd4b-008) 97307213-97312430 retained_intron
ENSMUST00000152385 (Frmd4b-010) 97323658-97396736 processed_transcript
ENSMUST00000155326 (Frmd4b-012) 97308137-97324140 processed_transcript
ENSMUSG00000035158 (Mitf)
microphthalmia-associated transcription factor 		ENSMUST00000043628 (Mitf-006) 97991792-98018707 protein_coding
ENSMUST00000043637 (Mitf-001) 97807058-98021349 protein_coding
ENSMUST00000101123 (Mitf-003) 97929799-98018707 protein_coding
ENSMUST00000113339 (Mitf-005) 97940918-98018707 protein_coding
ENSMUST00000139462 (Mitf-007) 97991819-98018497 nonsense_mediated_decay
ENSMUST00000144641 (Mitf-004) 97938494-97941128 processed_transcript
ENSMUST00000148233 (Mitf-002) 97807058-97942179 retained_intron
ENSMUSG00000064724 (Gm25852)
predicted gene, 25852 		ENSMUST00000082790 (Gm25852-201) 97547438-97547567 snoRNA
ENSMUSG00000065017 (Gm23510)
predicted gene, 23510 		ENSMUST00000083083 (Gm23510-201) 97572076-97572238 snRNA
ENSMUSG00000083086 (Gm15531)
predicted gene 15531 		ENSMUST00000118062 (Gm15531-001) 97890288-97890539 processed_pseudogene

Expression Patterns

Heat Map
Heat Map (Expressed Only)
Numeric Values
Region; Gene Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisCIL_0001TC_0001ENSDARG00000003732ENSDART00000056457ENSDART00000122793ENSDART00000143374ENSDARG00000074599ENSDART00000061947ENSDART00000154170ENSDART00000154434ENSDART00000155080ENSDART00000155601ENSDART00000156267ENSDARG00000096903ENSDART00000155202ENSDARG00000097469ENSDART00000157386CIL_0001TC_0002ENSG00000114541ENST00000398540ENST00000459638ENST00000460709ENST00000462308ENST00000462512ENST00000462888ENST00000470070ENST00000473029ENST00000473188ENST00000478263ENST00000483668ENST00000487751ENST00000489817ENST00000493127ENST00000493880ENST00000497475ENST00000497757ENST00000497880ENSG00000187098ENST00000314557ENST00000314589ENST00000328528ENST00000352241ENST00000394348ENST00000394351ENST00000429090ENST00000433517ENST00000448226ENST00000451708ENST00000457080ENST00000461014ENST00000461511ENST00000472437ENST00000478490ENST00000495741ENST00000531774ENSG00000239263ENST00000476891ENSG00000240265ENST00000498809ENSG00000240842ENST00000465347ENSG00000241665ENST00000473031ENSG00000241667ENST00000460597CIL_0001TC_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
Region; Gene Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisCIL_0001TC_0001ENSDARG00000003732ENSDART00000056457ENSDART00000122793ENSDARG00000074599ENSDART00000061947ENSDART00000154434ENSDART00000156267ENSDARG00000096903ENSDART00000155202ENSDARG00000097469ENSDART00000157386CIL_0001TC_0002ENSG00000114541ENST00000398540ENST00000462512ENST00000478263ENSG00000187098ENST00000314557ENST00000314589ENST00000352241ENST00000448226ENST00000472437ENST00000531774ENSG00000239263ENST00000476891ENSG00000240265ENST00000498809ENSG00000240842ENST00000465347ENSG00000241665ENST00000473031ENSG00000241667ENST00000460597CIL_0001TC_0003ENSMUSG00000030064ENSMUST00000032146ENSMUST00000113355ENSMUST00000113359ENSMUST00000143698ENSMUSG00000035158ENSMUST00000043628ENSMUST00000043637ENSMUST00000101123ENSMUST00000113339ENSMUST00000139462ENSMUST00000148233ENSMUSG00000064724ENSMUST00000082790ENSMUSG00000065017ENSMUST00000083083ENSMUSG00000083086ENSMUST00000118062
Gene Transcript Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSDARG00000003732 ENSDART00000056457 N/A N/A N/A 0.066±0.03 N/A N/A 0.211±0.00 1.189±0.93 N/A N/A 0.243±0.00 N/A N/A N/A
ENSDART00000122793 N/A N/A N/A 0.211±0.00 N/A N/A N/A N/A 0.065±0.00 N/A N/A N/A N/A N/A
ENSDART00000143374 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSDARG00000074599 ENSDART00000061947 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 0.502±0.00 N/A N/A N/A
ENSDART00000154170 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSDART00000154434 N/A N/A N/A 0.663±0.00 N/A N/A N/A 1.714±0.00 0.247±0.00 N/A 0.281±0.00 N/A N/A N/A
ENSDART00000155080 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSDART00000155601 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSDART00000156267 N/A N/A N/A 1.460±0.00 N/A N/A N/A N/A 1.132±0.00 N/A N/A N/A N/A N/A
ENSDARG00000096903 ENSDART00000155202 N/A N/A N/A 0.159±0.00 N/A N/A 0.113±0.00 0.315±0.27 N/A N/A N/A N/A N/A N/A
ENSDARG00000097469 ENSDART00000157386 N/A N/A N/A N/A N/A N/A 0.439±0.00 N/A 0.106±0.00 N/A N/A N/A N/A N/A
Gene Transcript Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSG00000114541 ENST00000398540 N/A 2.514±0.00 N/A 2.100±1.69 0.675±0.06 N/A 0.756±0.40 2.476±0.00 N/A 1.478±0.29 0.302±0.00 1.097±0.57 2.044±0.71 0.830±0.00
ENST00000459638 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000460709 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000462308 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000462512 N/A N/A N/A N/A N/A N/A N/A 6.460±0.00 N/A N/A N/A N/A N/A N/A
ENST00000462888 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000470070 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000473029 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000473188 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000478263 0.725±0.00 1.404±0.00 N/A 2.986±0.00 0.911±0.12 N/A 0.343±0.00 0.774±0.00 N/A N/A 0.163±0.00 1.330±0.45 2.128±1.13 0.274±0.00
ENST00000483668 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000487751 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000489817 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000493127 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000493880 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000497475 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000497757 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000497880 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSG00000187098 ENST00000314557 N/A N/A N/A N/A N/A 0.482±0.00 N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000314589 N/A N/A 4.604±0.00 N/A N/A N/A 3.954±0.00 N/A N/A 1.062±0.00 N/A N/A N/A N/A
ENST00000328528 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000352241 9.466±0.00 2.888±0.00 N/A 1.214±0.00 3.779±0.00 3.391±3.20 14.434±0.00 5.733±0.00 0.893±0.50 3.521±0.00 17.323±16.15 3.596±0.79 1.008±0.28 2.330±2.02
ENST00000394348 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000394351 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000429090 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000433517 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000448226 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 1.366±0.00 N/A N/A N/A
ENST00000451708 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000457080 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000461014 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000461511 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000472437 N/A N/A N/A N/A 2.013±0.00 N/A N/A N/A N/A N/A 2.362±0.00 N/A N/A N/A
ENST00000478490 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000495741 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000531774 N/A N/A 2.903±0.00 1.650±0.00 3.034±0.00 0.853±0.00 4.504±0.00 N/A 3.623±0.00 1.784±0.00 3.560±0.00 1.227±0.61 3.759±0.00 1.830±0.00
ENSG00000239263 ENST00000476891 0.037±0.00 0.037±0.00 N/A N/A N/A 0.008±0.00 0.322±0.00 N/A N/A 0.027±0.00 N/A 0.238±0.06 0.017±0.00 0.017±0.00
ENSG00000240265 ENST00000498809 N/A N/A N/A 0.160±0.00 N/A 0.117±0.00 0.049±0.00 0.054±0.00 N/A 0.095±0.00 N/A 0.176±0.15 N/A N/A
ENSG00000240842 ENST00000465347 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 0.334±0.18
ENSG00000241665 ENST00000473031 N/A N/A N/A N/A 0.269±0.00 N/A 1.578±0.00 N/A N/A N/A N/A N/A N/A N/A
ENSG00000241667 ENST00000460597 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 0.044±0.00
Gene Transcript Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUSG00000030064 ENSMUST00000032146 3.742±2.32 2.919±0.31 N/A N/A 3.359±0.77 3.375±0.73 1.094±0.17 4.620±0.69 1.208±0.28 4.123±1.23 0.316±0.00 4.792±1.18 N/A 1.413±0.12
ENSMUST00000113353 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUST00000113355 2.956±1.66 0.651±0.20 1.993±0.17 4.186±2.57 0.890±0.12 N/A N/A 1.033±0.00 1.159±0.06 4.235±0.73 0.246±0.01 1.407±0.58 3.221±1.39 N/A
ENSMUST00000113359 N/A 0.659±0.17 N/A 0.951±0.00 N/A N/A 0.561±0.03 2.500±0.00 1.057±0.49 2.614±0.00 0.409±0.17 2.709±0.93 2.242±0.61 0.843±0.27
ENSMUST00000124050 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUST00000126899 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUST00000135077 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUST00000138301 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUST00000142589 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUST00000143698 N/A 0.620±0.00 3.433±0.35 N/A 2.999±2.05 1.611±0.18 0.431±0.00 1.444±0.00 1.927±0.53 2.725±0.00 0.237±0.04 2.305±0.67 N/A N/A
ENSMUST00000146191 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUST00000152385 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUST00000155326 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUSG00000035158 ENSMUST00000043628 N/A N/A N/A 2.341±0.00 N/A N/A N/A N/A N/A N/A N/A 4.991±0.00 22.603±0.74 0.203±0.00
ENSMUST00000043637 3.379±1.10 0.931±0.12 1.218±0.33 0.107±0.02 1.494±0.37 0.595±0.06 3.056±1.24 1.709±0.14 0.228±0.10 1.375±0.34 1.132±0.65 1.384±0.60 10.051±5.38 0.157±0.01
ENSMUST00000101123 3.857±1.93 1.075±0.40 N/A 0.480±0.00 2.973±0.99 1.037±0.47 6.614±0.91 2.387±0.58 0.411±0.17 1.680±0.73 N/A 4.634±0.79 N/A 0.232±0.09
ENSMUST00000113339 N/A 0.853±0.15 N/A N/A 2.019±0.84 0.459±0.00 N/A 0.885±0.13 N/A 0.993±0.36 N/A 5.849±0.00 N/A N/A
ENSMUST00000139462 N/A N/A N/A N/A N/A N/A N/A N/A 0.278±0.03 N/A N/A N/A N/A N/A
ENSMUST00000144641 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUST00000148233 N/A 1.252±0.00 N/A N/A N/A N/A N/A N/A 0.318±0.00 N/A N/A N/A N/A N/A
ENSMUSG00000064724 ENSMUST00000082790 N/A N/A N/A 9.438±0.00 N/A N/A N/A N/A N/A N/A N/A N/A 2.444±0.00 N/A
ENSMUSG00000065017 ENSMUST00000083083 281.626±0.00 N/A N/A 1.401±0.00 N/A N/A N/A N/A N/A N/A N/A N/A 6.424±3.79 N/A
ENSMUSG00000083086 ENSMUST00000118062 N/A N/A 0.099±0.00 N/A 1.429±1.01 0.954±0.00 N/A 0.440±0.04 0.259±0.00 1.058±0.33 N/A N/A 0.131±0.00 N/A

Loading