C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Gene Info

Description: Sec61 alpha 1 subunit (S. cerevisiae)
Gene AccessionGene NameTax IDStrandPositionGene Biotype
ENSMUSG00000030082 Sec61a1 10090 - 6:88503601-88518905 protein_coding
  Transcript Accession Transcript Name Position Transcript Biotype
  ENSMUST00000032168 Sec61a1-001 88503601-88518905 protein_coding
  ENSMUST00000125016 Sec61a1-007 88515384-88518903 retained_intron
  ENSMUST00000130807 Sec61a1-008 88514207-88515980 retained_intron
  ENSMUST00000130918 Sec61a1-006 88513811-88518773 retained_intron
  ENSMUST00000136103 Sec61a1-009 88504801-88506371 processed_transcript
  ENSMUST00000139551 Sec61a1-005 88515364-88518791 processed_transcript
  ENSMUST00000139676 Sec61a1-003 88515326-88518828 retained_intron
  ENSMUST00000145421 Sec61a1-002 88506329-88513901 retained_intron
  ENSMUST00000155079 Sec61a1-004 88518178-88518793 processed_transcript

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENSMUST00000032168ENSMUST00000145421
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUST00000032168 86.398±39.67 132.140±4.52 59.172±7.07 38.002±22.52 81.112±23.48 165.566±9.50 19.266±2.66 65.393±9.29 93.191±21.75 86.880±17.77 5.300±0.64 177.485±69.13 104.452±30.41 86.443±34.97
ENSMUST00000145421 N/A N/A N/A 1.269±0.00 6.273±0.00 N/A N/A N/A N/A N/A N/A N/A N/A N/A

Conserved Regions

Gene is not located within a conserved region.

Gene Ontology
GO IDEvidence TypeGO Description
GO:0005515 IEA protein binding
GO:0005791 IEA rough endoplasmic reticulum
GO:0006614 ISO SRP-dependent cotranslational protein targeting to membrane
GO:0006620 ISO posttranslational protein targeting to membrane
GO:0007029 ISO endoplasmic reticulum organization
GO:0016020 ISO membrane
GO:0016021 IEA integral component of membrane
GO:0016049 ISO cell growth
GO:0030670 TAS phagocytic vesicle membrane
GO:0034341 IEA response to interferon-gamma
GO:0043022 IDA ribosome binding

Homologs

ENSEMBL Accession Gene Name Description Biotype Species
ENSDARG00000005675 sec61al2 Sec61 alpha like 2 protein_coding Danio_rerio
ENSDARG00000021669 sec61a1 Sec61 alpha 1 subunit (S. cerevisiae) protein_coding Danio_rerio
ENSG00000058262 SEC61A1 Sec61 alpha 1 subunit (S. cerevisiae) protein_coding Homo_sapiens

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