C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: Sec61 alpha 1 subunit (S. cerevisiae)
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000032168 Sec61a1-001 ENSMUSG00000030082 10090 - 6:88503601-88518905 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENSMUST00000032168
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUST00000032168 86.398±39.67 132.140±4.52 59.172±7.07 38.002±22.52 81.112±23.48 165.566±9.50 19.266±2.66 65.393±9.29 93.191±21.75 86.880±17.77 5.300±0.64 177.485±69.13 104.452±30.41 86.443±34.97

Conserved Regions

Gene is not located within a conserved region.

Gene Ontology

GO IDEvidence TypeGO Description
GO:0005515 IEA protein binding
GO:0005791 IEA rough endoplasmic reticulum
GO:0006614 ISO SRP-dependent cotranslational protein targeting to membrane
GO:0006620 ISO posttranslational protein targeting to membrane
GO:0007029 ISO endoplasmic reticulum organization
GO:0016020 ISO membrane
GO:0016021 IEA integral component of membrane
GO:0016049 ISO cell growth
GO:0030670 TAS phagocytic vesicle membrane
GO:0034341 IEA response to interferon-gamma
GO:0043022 IDA ribosome binding

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSDART00000049425 sec61al2-001 protein_coding Danio_rerio 0 1086
ENST00000243253 SEC61A1-001 protein_coding Homo_sapiens 0 2002
ENST00000298428 SEC61A2-009 protein_coding Homo_sapiens 0 1024
ENST00000304267 SEC61A2-008 protein_coding Homo_sapiens 0 911
ENST00000379033 SEC61A2-201 protein_coding Homo_sapiens 0 909
ENST00000418772 SEC61A2-004 protein_coding Homo_sapiens 3e-34 148
ENST00000424880 SEC61A1-003 protein_coding Homo_sapiens 0 1502
ENST00000464451 SEC61A1-002 protein_coding Homo_sapiens 0 1927
ENST00000466451 SEC61A2-013 processed_transcript Homo_sapiens 0 202
ENST00000472221 SEC61A2-012 nonsense_mediated_decay Homo_sapiens 0 237
ENST00000475268 SEC61A2-006 nonsense_mediated_decay Homo_sapiens 0 911
ENST00000483956 SEC61A1-004 processed_transcript Homo_sapiens 0 948
ENST00000495368 SEC61A2-007 processed_transcript Homo_sapiens 0 802
ENST00000498837 SEC61A1-007 processed_transcript Homo_sapiens 0 375

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