C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Gene Info

Description: basic helix-loop-helix family, member e40
Gene AccessionGene NameTax IDStrandPositionGene Biotype
ENSMUSG00000030103 Bhlhe40 10090 + 6:108660629-108666925 protein_coding
  Transcript Accession Transcript Name Position Transcript Biotype
  ENSMUST00000032194 Bhlhe40-001 108660629-108666925 protein_coding
  ENSMUST00000163617 Bhlhe40-003 108660874-108662699 protein_coding
  ENSMUST00000166346 Bhlhe40-002 108660799-108661334 retained_intron

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENSMUST00000032194
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUST00000032194 9.272±3.88 23.618±6.29 10.889±2.79 6.612±7.89 20.117±0.53 18.977±1.63 9.587±3.13 19.344±0.73 7.528±3.93 8.406±0.54 27.211±6.24 10.637±9.52 20.439±9.96 0.906±0.27

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_00050D CIL_00050D_0002 CGP 6:108213118-108666925
CIL_00050C CIL_00050C_0002 CGP 6:108660629-108823723

Gene Ontology
GO IDEvidence TypeGO Description
GO:0000122 IEA negative regulation of transcription from RNA polymerase II promoter
GO:0000981 IEA sequence-specific DNA binding RNA polymerase II transcription factor activity
GO:0001078 IDA RNA polymerase II core promoter proximal region sequence-specific DNA binding transcription factor activity involved in negative regulation of transcription
GO:0001102 IDA RNA polymerase II activating transcription factor binding
GO:0001191 IEA RNA polymerase II transcription factor binding transcription factor activity involved in negative regulation of transcription
GO:0003677 IDA DNA binding
GO:0003705 IDA RNA polymerase II distal enhancer sequence-specific DNA binding transcription factor activity
GO:0003714 IDA transcription corepressor activity
GO:0005515 IPI protein binding
GO:0005634 IDA nucleus
GO:0005654 TAS nucleoplasm
GO:0005730 IEA nucleolus
GO:0005794 IEA Golgi apparatus
GO:0006366 IDA transcription from RNA polymerase II promoter
GO:0007623 IEP circadian rhythm
GO:0009416 IEP response to light stimulus
GO:0019904 IEA protein domain specific binding
GO:0032922 IMP circadian regulation of gene expression
GO:0042803 IEA protein homodimerization activity
GO:0043153 IMP entrainment of circadian clock by photoperiod
GO:0043425 IEA bHLH transcription factor binding
GO:0043426 IDA MRF binding
GO:0043433 IEA negative regulation of sequence-specific DNA binding transcription factor activity
GO:0045892 IDA negative regulation of transcription, DNA-templated
GO:0046982 IDA protein heterodimerization activity
GO:0046983 IEA protein dimerization activity
GO:0070888 IDA E-box binding

Homologs

ENSEMBL Accession Gene Name Description Biotype Species
ENSDARG00000004060 bhlhe40 basic helix-loop-helix family, member e40 protein_coding Danio_rerio
ENSG00000134107 BHLHE40 basic helix-loop-helix family, member e40 protein_coding Homo_sapiens

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