C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Gene Info

Description: LIM domain only 3
Gene AccessionGene NameTax IDStrandPositionGene Biotype
ENSMUSG00000030226 Lmo3 10090 - 6:138362918-138581968 protein_coding
  Transcript Accession Transcript Name Position Transcript Biotype
  ENSMUST00000067437 Lmo3-006 138364439-138422831 nonsense_mediated_decay
  ENSMUST00000160050 Lmo3-008 138364962-138424615 nonsense_mediated_decay
  ENSMUST00000161450 Lmo3-007 138365595-138422917 protein_coding
  ENSMUST00000162185 Lmo3-005 138377208-138422999 protein_coding
  ENSMUST00000162772 Lmo3-001 138362918-138581968 protein_coding
  ENSMUST00000162932 Lmo3-003 138416415-138426816 protein_coding
  ENSMUST00000163024 Lmo3-002 138365591-138422974 protein_coding
  ENSMUST00000163065 Lmo3-004 138364196-138421452 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENSMUST00000067437ENSMUST00000160050ENSMUST00000161450ENSMUST00000162185ENSMUST00000162772ENSMUST00000162932ENSMUST00000163024ENSMUST00000163065
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUST00000067437 0.061±0.00 0.070±0.00 N/A 8.406±0.00 N/A N/A 0.016±0.00 0.023±0.00 0.018±0.01 N/A N/A 0.079±0.07 N/A 0.022±0.00
ENSMUST00000160050 N/A 0.123±0.00 N/A N/A N/A N/A 0.022±0.00 N/A 0.014±0.00 N/A N/A 0.224±0.02 0.011±0.00 N/A
ENSMUST00000161450 0.037±0.00 0.280±0.00 0.115±0.00 29.445±0.00 N/A 0.222±0.10 N/A 0.035±0.00 0.007±0.00 N/A 0.016±0.00 0.117±0.06 N/A 0.077±0.00
ENSMUST00000162185 0.084±0.00 0.146±0.07 N/A N/A 0.156±0.00 N/A N/A N/A 0.037±0.04 0.109±0.04 N/A 0.435±0.25 N/A N/A
ENSMUST00000162772 0.018±0.01 N/A 0.028±0.00 11.199±6.13 N/A 0.182±0.06 0.023±0.00 0.033±0.00 0.011±0.01 N/A 0.011±0.00 0.085±0.05 0.003±0.00 0.035±0.00
ENSMUST00000162932 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 0.145±0.07 N/A N/A
ENSMUST00000163024 0.122±0.00 0.170±0.10 0.167±0.02 15.903±0.00 N/A 0.347±0.00 N/A N/A 0.029±0.00 N/A N/A 0.204±0.00 N/A N/A
ENSMUST00000163065 N/A N/A 0.154±0.04 10.425±0.44 N/A 0.158±0.00 0.022±0.01 0.035±0.00 0.009±0.00 N/A 0.014±0.00 0.073±0.05 0.012±0.00 0.011±0.00

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0007NM CIL_0007NM_0002 UCNEbase 6:137824068-139476259
CIL_00098O CIL_00098O_0002 VISTA 6:137950896-138552847
CIL_0009BE CIL_0009BE_0002 VISTA 6:138079417-138680507
CIL_0005FE CIL_0005FE_0002 CGP 6:138140316-138581968
CIL_0008KE CIL_0008KE_0002 VISTA 6:138213754-138816103
CIL_0008XY CIL_0008XY_0002 VISTA 6:138281719-138883348

Gene Ontology
GO IDEvidence TypeGO Description
GO:0005737 IEA cytoplasm
GO:0006351 IEA transcription, DNA-templated
GO:0006355 IEA regulation of transcription, DNA-templated
GO:0008270 IEA zinc ion binding
GO:0035360 IEA positive regulation of peroxisome proliferator activated receptor signaling pathway
GO:0045600 IEA positive regulation of fat cell differentiation
GO:0070373 IEA negative regulation of ERK1 and ERK2 cascade
GO:2000324 IEA positive regulation of glucocorticoid receptor signaling pathway

Homologs

ENSEMBL Accession Gene Name Description Biotype Species
ENSDARG00000008720 lmo3 LIM domain only 3 protein_coding Danio_rerio
ENSG00000048540 LMO3 LIM domain only 3 (rhombotin-like 2) protein_coding Homo_sapiens

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