C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: LIM domain only 3
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000162772 Lmo3-001 ENSMUSG00000030226 10090 - 6:138362918-138581968 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeBladderBrainColonHeartKidneyLiverMuscleOvaryPlacentaTestisENSMUST00000162772
Transcript ID Adipose Bladder Brain Colon Heart Kidney Liver Muscle Ovary Placenta Testis
ENSMUST00000162772 0.018±0.01 0.028±0.00 11.199±6.13 0.182±0.06 0.023±0.00 0.033±0.00 0.011±0.01 0.011±0.00 0.085±0.05 0.003±0.00 0.035±0.00

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0007NM CIL_0007NM_0002 UCNEbase 6:137824068-139476259
CIL_00098O CIL_00098O_0002 VISTA 6:137950896-138552847
CIL_0009BE CIL_0009BE_0002 VISTA 6:138079417-138680507
CIL_0005FE CIL_0005FE_0002 CGP 6:138140316-138581968
CIL_0008KE CIL_0008KE_0002 VISTA 6:138213754-138816103
CIL_0008XY CIL_0008XY_0002 VISTA 6:138281719-138883348

Gene Ontology

GO IDEvidence TypeGO Description
GO:0005737 IEA cytoplasm
GO:0006351 IEA transcription, DNA-templated
GO:0006355 IEA regulation of transcription, DNA-templated
GO:0008270 IEA zinc ion binding
GO:0035360 IEA positive regulation of peroxisome proliferator activated receptor signaling pathway
GO:0045600 IEA positive regulation of fat cell differentiation
GO:0070373 IEA negative regulation of ERK1 and ERK2 cascade
GO:2000324 IEA positive regulation of glucocorticoid receptor signaling pathway

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSDART00000003583 lmo3-001 protein_coding Danio_rerio 0.00000000000008 84
ENST00000261169 LMO3-201 protein_coding Homo_sapiens 0 1339
ENST00000320122 LMO3-014 protein_coding Homo_sapiens 0 1339
ENST00000332914 LMO3-017 processed_transcript Homo_sapiens 0 243
ENST00000354662 LMO3-202 protein_coding Homo_sapiens 0 1343
ENST00000396205 LMO3-004 nonsense_mediated_decay Homo_sapiens 0 1014
ENST00000424192 LMO3-002 nonsense_mediated_decay Homo_sapiens 0 549
ENST00000439600 LMO3-015 retained_intron Homo_sapiens 0 327
ENST00000441439 LMO3-003 protein_coding Homo_sapiens 0 1349
ENST00000447609 LMO3-010 protein_coding Homo_sapiens 0 1349
ENST00000453727 LMO3-012 nonsense_mediated_decay Homo_sapiens 0 1020
ENST00000534946 LMO3-020 protein_coding Homo_sapiens 0 1026
ENST00000535535 LMO3-013 protein_coding Homo_sapiens 0 1338
ENST00000536172 LMO3-027 nonsense_mediated_decay Homo_sapiens 0 333
ENST00000536509 LMO3-023 processed_transcript Homo_sapiens 0 250
ENST00000537304 LMO3-011 protein_coding Homo_sapiens 0 1347
ENST00000537568 LMO3-018 processed_transcript Homo_sapiens 0 241
ENST00000537757 LMO3-024 protein_coding Homo_sapiens 0 573
ENST00000538020 LMO3-030 protein_coding Homo_sapiens 0 276
ENST00000538051 LMO3-022 protein_coding Homo_sapiens 0 468
ENST00000539232 LMO3-028 nonsense_mediated_decay Homo_sapiens 0 241
ENST00000539534 LMO3-031 protein_coding Homo_sapiens 0 564
ENST00000540445 LMO3-007 protein_coding Homo_sapiens 0 455
ENST00000540590 LMO3-019 protein_coding Homo_sapiens 0 403
ENST00000540848 LMO3-001 protein_coding Homo_sapiens 0 1349
ENST00000541295 LMO3-203 protein_coding Homo_sapiens 0 1339
ENST00000541589 LMO3-006 nonsense_mediated_decay Homo_sapiens 0 1020
ENST00000541764 LMO3-009 nonsense_mediated_decay Homo_sapiens 0 787
ENST00000541846 LMO3-016 protein_coding Homo_sapiens 0 660
ENST00000543721 LMO3-008 retained_intron Homo_sapiens 0 337
ENST00000544276 LMO3-026 processed_transcript Homo_sapiens 0 329
ENST00000544754 LMO3-005 nonsense_mediated_decay Homo_sapiens 0 331
ENST00000545436 LMO3-029 protein_coding Homo_sapiens 0 422
ENST00000546279 LMO3-021 protein_coding Homo_sapiens 0 534
ENST00000546281 LMO3-025 protein_coding Homo_sapiens 0 573
ENST00000616247 LMO3-204 protein_coding Homo_sapiens 0 1020

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