C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Gene Info

Description: LIM domain only 3 (rhombotin-like 2)
Gene AccessionGene NameTax IDStrandPositionGene Biotype
ENSG00000048540 LMO3 9606 - 12:16548373-16610594 protein_coding
  Transcript Accession Transcript Name Position Transcript Biotype
  ENST00000261169 LMO3-201 16548373-16605379 protein_coding
  ENST00000320122 LMO3-014 16548424-16605379 protein_coding
  ENST00000332914 LMO3-017 16560506-16610094 processed_transcript
  ENST00000354662 LMO3-202 16548373-16608214 protein_coding
  ENST00000396205 LMO3-004 16548424-16608104 nonsense_mediated_decay
  ENST00000424192 LMO3-002 16550968-16609824 nonsense_mediated_decay
  ENST00000439600 LMO3-015 16600017-16605056 retained_intron
  ENST00000441439 LMO3-003 16548420-16608135 protein_coding
  ENST00000447609 LMO3-010 16548421-16606800 protein_coding
  ENST00000453727 LMO3-012 16549375-16606440 nonsense_mediated_decay
  ENST00000534946 LMO3-020 16550875-16609889 protein_coding
  ENST00000535535 LMO3-013 16550383-16605970 protein_coding
  ENST00000536172 LMO3-027 16551228-16607185 nonsense_mediated_decay
  ENST00000536509 LMO3-023 16560475-16607924 processed_transcript
  ENST00000537304 LMO3-011 16550449-16606531 protein_coding
  ENST00000537568 LMO3-018 16594252-16610089 processed_transcript
  ENST00000537757 LMO3-024 16551304-16607389 protein_coding
  ENST00000538020 LMO3-030 16600686-16602293 protein_coding
  ENST00000538051 LMO3-022 16560453-16608214 protein_coding
  ENST00000539232 LMO3-028 16551318-16605913 nonsense_mediated_decay
  ENST00000539534 LMO3-031 16551304-16602196 protein_coding
  ENST00000540445 LMO3-007 16551045-16607150 protein_coding
  ENST00000540590 LMO3-019 16560492-16610037 protein_coding
  ENST00000540848 LMO3-001 16550199-16610526 protein_coding
  ENST00000541295 LMO3-203 16548373-16605970 protein_coding
  ENST00000541589 LMO3-006 16550202-16608027 nonsense_mediated_decay
  ENST00000541764 LMO3-009 16550810-16607006 nonsense_mediated_decay
  ENST00000541846 LMO3-016 16551182-16610594 protein_coding
  ENST00000543721 LMO3-008 16597616-16607122 retained_intron
  ENST00000544276 LMO3-026 16598875-16608088 processed_transcript
  ENST00000544754 LMO3-005 16551232-16608000 nonsense_mediated_decay
  ENST00000545436 LMO3-029 16560481-16604849 protein_coding
  ENST00000546279 LMO3-021 16560413-16608726 protein_coding
  ENST00000546281 LMO3-025 16551304-16607355 protein_coding
  ENST00000616247 LMO3-204 16548373-16600860 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENST00000320122ENST00000332914ENST00000424192ENST00000439600ENST00000441439ENST00000447609ENST00000534946ENST00000537304ENST00000540445ENST00000541764ENST00000541846ENST00000543721ENST00000546279ENST00000616247
Transcript ID Adipose Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENST00000320122 N/A N/A N/A N/A N/A N/A N/A N/A N/A 0.117±0.00 0.057±0.00 N/A
ENST00000332914 N/A N/A N/A N/A N/A 0.475±0.00 N/A N/A N/A N/A N/A N/A
ENST00000424192 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 0.333±0.00
ENST00000439600 N/A N/A N/A N/A N/A N/A 0.123±0.00 N/A N/A 0.400±0.00 N/A N/A
ENST00000441439 5.549±0.00 9.008±0.00 N/A 1.347±0.00 N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000447609 N/A 12.108±0.00 N/A N/A 0.832±0.00 0.934±0.00 N/A 1.472±0.00 N/A 0.418±0.00 N/A N/A
ENST00000534946 N/A 71.850±0.00 N/A 5.240±0.00 N/A N/A 18.455±0.00 N/A N/A N/A N/A N/A
ENST00000537304 N/A N/A 3.833±0.00 4.020±0.00 N/A N/A 10.711±0.00 N/A N/A N/A 0.093±0.00 N/A
ENST00000540445 N/A N/A N/A N/A 0.126±0.00 N/A N/A N/A N/A N/A N/A 0.417±0.00
ENST00000541764 N/A N/A N/A N/A 0.065±0.00 N/A N/A N/A N/A N/A N/A N/A
ENST00000541846 N/A N/A N/A N/A N/A N/A N/A N/A 1.684±0.00 2.182±0.00 N/A N/A
ENST00000543721 N/A N/A N/A 1.295±0.00 0.031±0.00 N/A N/A 11.373±0.00 N/A N/A N/A N/A
ENST00000546279 N/A N/A N/A N/A N/A N/A 0.272±0.00 N/A N/A N/A N/A N/A
ENST00000616247 N/A N/A 2.224±0.94 7.568±0.00 0.351±0.00 0.070±0.00 N/A 1.861±0.00 N/A N/A N/A 0.517±0.31

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0007NM CIL_0007NM_0001 UCNEbase 12:16018180-18077080
CIL_00098O CIL_00098O_0001 VISTA 12:16157111-16759002
CIL_0005FD CIL_0005FD_0001 CGP 12:16188485-16609259
CIL_0009BE CIL_0009BE_0001 VISTA 12:16262381-16863426
CIL_0005FE CIL_0005FE_0001 CGP 12:16347142-16610594
CIL_0008KE CIL_0008KE_0001 VISTA 12:16416099-17018481
CIL_0008XY CIL_0008XY_0001 VISTA 12:16487774-17089388

Gene Ontology
GO IDEvidence TypeGO Description
GO:0005737 IDA cytoplasm
GO:0006351 IEA transcription, DNA-templated
GO:0006355 IEA regulation of transcription, DNA-templated
GO:0008270 IEA zinc ion binding
GO:0035360 IDA positive regulation of peroxisome proliferator activated receptor signaling pathway
GO:0045600 IMP positive regulation of fat cell differentiation
GO:0070373 IDA negative regulation of ERK1 and ERK2 cascade
GO:2000324 IDA positive regulation of glucocorticoid receptor signaling pathway

Homologs

ENSEMBL Accession Gene Name Description Biotype Species
ENSDARG00000008720 lmo3 LIM domain only 3 protein_coding Danio_rerio
ENSMUSG00000030226 Lmo3 LIM domain only 3 protein_coding Mus_musculus

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